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SNCA-AS1 (SNCA Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH04J089837 | Promoter/Enhancer | 1.8 | EPDnew Ensembl ENCODE CraniofacialAtlas | 600.7 | +0.6 | 600 | 3.6 | CTCF PRDM10 ZNF692 PRDM1 POLR2A PATZ1 ZNF501 EZH2 ELF4 ZNF341 | SNCA SNCA-AS1 GPRIN3 | |
GH04J089799 | Enhancer | 0.6 | Ensembl ENCODE | 6.2 | -35.8 | -35800 | 4 | JUND ZNF366 JUN POLR2A | MMRN1 SNCA-AS1 SNCA piR-50852-111 lnc-MMRN1-3 GPRIN3 | |
GH04J089829 | Enhancer | 0.7 | Ensembl ENCODE | 0.4 | -6.6 | -6600 | 2.8 | IKZF2 DPF2 RELB ELF1 IKZF1 SPI1 TBX21 ATF7 MTA2 ETV6 | SNCA SNCA-AS1 piR-50852-111 GPRIN3 | |
GH04J089819 | Enhancer | 0.5 | Ensembl | 0.4 | -15.8 | -15800 | 2.8 | ATF7 ZNF512 PRDM1 SPI1 ZNF366 ATF2 | SNCA MMRN1 SNCA-AS1 piR-50852-111 GPRIN3 | |
GH04J089797 | Enhancer | 0.4 | Ensembl ENCODE | 0.3 | -39.0 | -38962 | 0.7 | JUND | piR-50852-111 lnc-MMRN1-3 SNCA-AS1 SNCA GPRIN3 |
RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
---|---|---|---|---|
URS000075B38D_9606 | lncRNA | 821 | 4 |
HGNC: 50600, RefSeq: NR_045481, LNCipedia: SNCA-AS1:1, NONCODE: NONHSAT097403.2, |
URS000041475A_9606 | lncRNA | 2646 | 3 |
Ensembl: ENST00000501215 (view in UCSC) , LNCipedia: SNCA-AS1:3, NONCODE: NONHSAT097404.2, |
URS000046C31B_9606 | lncRNA | 801 | 2 |
Ensembl: ENST00000513653 (view in UCSC) , LNCipedia: SNCA-AS1:2, |
URS00009ADD7A_9606 | lncRNA | 2990 | 1 |
NONCODE: NONHSAT198824.1, |
URS0000417CC8_9606 | antisense_RNA | 1400 | 1 |
ENA: KF728378.1:1..1400:ncRNA, |
SNP ID | Clinical significance and condition | Chr 04 pos | Variation | AA Info | Type |
---|---|---|---|---|---|
904211 | Uncertain Significance: Parkinson Disease, Dominant | 89,836,955(+) | C/T | NON_CODING_TRANSCRIPT_VARIANT,FIVE_PRIME_UTR_VARIANT,INTRON_VARIANT | |
904212 | Uncertain Significance: Parkinson Disease, Dominant | 89,837,051(+) | G/C | NON_CODING_TRANSCRIPT_VARIANT,FIVE_PRIME_UTR_VARIANT,INTRON_VARIANT | |
904994 | Uncertain Significance: Parkinson Disease, Dominant | 89,837,063(+) | G/A | NON_CODING_TRANSCRIPT_VARIANT,FIVE_PRIME_UTR_VARIANT,INTRON_VARIANT | |
rs1560562993 | Uncertain Significance: Parkinson Disease, Dominant | 89,836,961(+) | C/T | SPLICE_DONOR_VARIANT,FIVE_PRIME_UTR_VARIANT,INTRON_VARIANT | |
rs367902113 | Uncertain Significance: Parkinson Disease, Dominant | 89,837,065(+) | C/T | FIVE_PRIME_UTR_VARIANT,INTRON_VARIANT |
No disorders were found for SNCA-AS1 Gene.