Aliases for SNCA-AS1 Gene
Subcategory (RNA class) for SNCA-AS1 Gene
non-coding RNA
Quality Score for this RNA gene is
13
External Ids for SNCA-AS1 Gene
- HGNC: 50600
- Entrez Gene: 644248
- Ensembl: ENSG00000247775
Summaries for SNCA-AS1 Gene
GeneCards Summary for SNCA-AS1 Gene
SNCA-AS1 (SNCA Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.
Additional gene information for SNCA-AS1 Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNCA-AS1 Gene
Genomics for SNCA-AS1 Gene
GeneHancer (GH) Regulatory Elements for SNCA-AS1 Gene
Promoters and enhancers for SNCA-AS1 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH04J089835 | Promoter/Enhancer | 1.9 | EPDnew Ensembl ENCODE | 650.7 | +0.8 | 751 | 2.5 | KLF17 NFXL1 BMI1 ZNF2 ZNF335 GLIS2 EGR1 ZNF366 SCRT2 KLF13 | SNCA SNCA-AS1 | |
| GH04J089836 | Promoter | 0.5 | EPDnew | 650.7 | -0.8 | -755 | 0.1 | SNCA SNCA-AS1 ENSG00000276542 | ||
| GH04J089829 | Enhancer | 0.7 | Ensembl ENCODE | 0.4 | -6.7 | -6663 | 1.1 | IKZF1 ATF7 ELF1 ETV6 DPF2 IKZF2 SPI1 | SNCA SNCA-AS1 ENSG00000276542 | |
| GH04J089752 | Enhancer | 1.1 | Ensembl ENCODE | 0.2 | -82.6 | -82632 | 2.4 | PKNOX1 INSM2 FEZF1 ZEB1 ZNF366 ZSCAN5C SCRT2 SMARCC2 FOS SP3 | MMRN1 SNCA ENSG00000276542 ENSG00000277695 SNCA-AS1 | |
| GH04J089799 | Enhancer | 0.4 | ENCODE | 0.3 | -36.1 | -36081 | 2.1 | JUND POLR2A JUN | MMRN1 SNCA SNCA-AS1 ENSG00000276542 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)
GeneHancers around SNCA-AS1 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Locations for SNCA-AS1 Gene
Genomic Locations for SNCA-AS1 Gene
- chr4:89,836,401-89,841,991
- (GRCh38/hg38)
- Size:
- 5,591 bases
- Orientation:
- Plus strand
- chr4:90,757,559-90,763,129
- (GRCh37/hg19)
- Size:
- 5,571 bases
- Orientation:
- Plus strand
Genomic View for SNCA-AS1 Gene
Genes around SNCA-AS1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 4q22.1 by Entrez Gene
- 4q22.1 by HGNC
- 4q22.1 by Ensembl
SNCA-AS1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SNCA-AS1 Gene
Proteins for SNCA-AS1 Gene
Post-translational modifications for SNCA-AS1 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for SNCA-AS1
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNCA-AS1
- Origene Custom Protein Services for SNCA-AS1
- Search GeneTex for Proteins for SNCA-AS1
No data available for DME Specific Peptides for SNCA-AS1 Gene
Domains & Families for SNCA-AS1 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNCA-AS1 Gene
Function for SNCA-AS1 Gene
Phenotypes From GWAS Catalog for SNCA-AS1 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for SNCA-AS1
-
miRNA Products
Inhibitory RNA Products
Clone Products
- GenScript: Custom all cDNA clones Services for SNCA-AS1
- VectorBuilder custom plasmid, inducible vectors for SNCA-AS1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for SNCA-AS1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNCA-AS1 Gene
Localization for SNCA-AS1 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNCA-AS1 Gene
Transcripts for SNCA-AS1 Gene
mRNA/cDNA for SNCA-AS1 Gene
- (2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
-
- ENST00000513653 801 bps (uc021xqd.2)
- ENST00000501215 2646 bps (uc062yff.1)
- (3) RNA Central transcripts :
CRISPR Products
- Browse CRISPR knockouts for SNCA-AS1
miRNA Products
Inhibitory RNA Products
Clone Products
- GenScript: Custom all cDNA clones Services for SNCA-AS1
- VectorBuilder custom plasmid, inducible vectors for SNCA-AS1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for SNCA-AS1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Expression for SNCA-AS1 Gene
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNCA-AS1 Gene
Orthologs for SNCA-AS1 Gene
No data available for Orthologs for SNCA-AS1 Gene
Paralogs for SNCA-AS1 Gene
No data available for Paralogs for SNCA-AS1 Gene
Variants for SNCA-AS1 Gene
| SNP ID | Clin | Chr 04 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs104893878 | pathogenic, Parkinson disease 1 | 89,835,580(+) | C/G | upstream_transcript_variant | |
| rs367902113 | uncertain-significance, Parkinson Disease, Dominant | 89,837,065(+) | C/T | intron_variant | |
| rs372025454 | likely-benign, Parkinson Disease, Dominant | 89,837,210(+) | C/T | intron_variant | |
| rs545809130 | uncertain-significance, Parkinson Disease, Dominant | 89,836,947(+) | G/A | intron_variant | |
| rs757451373 | uncertain-significance, Parkinson Disease, Dominant | 89,837,155(+) | C/G | intron_variant |
Additional Variant Information for SNCA-AS1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SNCA-AS1
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNCA-AS1 Gene
Disorders for SNCA-AS1 Gene
Additional Disease Information for SNCA-AS1
No disorders were found for SNCA-AS1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNCA-AS1 Gene
Publications for SNCA-AS1 Gene
- Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 58
Products for SNCA-AS1 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Human Proteins and Enzymes
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNCA-AS1
- Origene Custom Protein Services for SNCA-AS1
- Browse OriGene Inhibitory RNA Products For SNCA-AS1
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for SNCA-AS1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SNCA-AS1
- GenScript: Custom all cDNA clones Services for SNCA-AS1
- GenScript Custom Purified and Recombinant Proteins Services for SNCA-AS1
- GenScript Custom Assay Services for SNCA-AS1
- GenScript Custom overexpressing Cell Line Services for SNCA-AS1
- Browse GenScript CRISPR for SNCA-AS1
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for SNCA-AS1
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Cyagen custom Knockout/knockin (KOKI) mouse models for SNCA-AS1
- VectorBuilder custom plasmid, inducible vectors for SNCA-AS1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for SNCA-AS1
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SNCA-AS1
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for SNCA-AS1
- Search GeneCopoeia for miRNA 3'UTR Target clone products for SNCA-AS1
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for SNCA-AS1
Sources for SNCA-AS1 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew
- (158) Applied Biosystems
- (159) GlyConnect
- (160) Aminode
- (161) GeneCopoeia
- (162) GPS-Prot
- (163) RNACentral
- (164) LncRNADisease
- (165) LOVD
- (166) miR2Disease
- (167) DiseaseEnhancer
- (168) Boster Bio
- (169) Biorbyt