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Aliases for SNCA-AS1 Gene

Subcategory (RNA class) for SNCA-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for SNCA-AS1 Gene

  • SNCA Antisense RNA 1 2 3 5

External Ids for SNCA-AS1 Gene

Summaries for SNCA-AS1 Gene

GeneCards Summary for SNCA-AS1 Gene

SNCA-AS1 (SNCA Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SNCA-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNCA-AS1 Gene

Genomics for SNCA-AS1 Gene

GeneHancer (GH) Regulatory Elements for SNCA-AS1 Gene

Promoters and enhancers for SNCA-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J089835 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 650.7 +0.8 751 2.5 KLF17 NFXL1 BMI1 ZNF2 ZNF335 GLIS2 EGR1 ZNF366 SCRT2 KLF13 SNCA SNCA-AS1
GH04J089836 Promoter 0.5 EPDnew 650.7 -0.8 -755 0.1 SNCA SNCA-AS1 ENSG00000276542
GH04J089829 Enhancer 0.7 Ensembl ENCODE 0.4 -6.7 -6663 1.1 IKZF1 ATF7 ELF1 ETV6 DPF2 IKZF2 SPI1 SNCA SNCA-AS1 ENSG00000276542
GH04J089752 Enhancer 1.1 Ensembl ENCODE 0.2 -82.6 -82632 2.4 PKNOX1 INSM2 FEZF1 ZEB1 ZNF366 ZSCAN5C SCRT2 SMARCC2 FOS SP3 MMRN1 SNCA ENSG00000276542 ENSG00000277695 SNCA-AS1
GH04J089799 Enhancer 0.4 ENCODE 0.3 -36.1 -36081 2.1 JUND POLR2A JUN MMRN1 SNCA SNCA-AS1 ENSG00000276542
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNCA-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNCA-AS1 Gene

Genomic Locations for SNCA-AS1 Gene
chr4:89,836,401-89,841,991
(GRCh38/hg38)
Size:
5,591 bases
Orientation:
Plus strand
chr4:90,757,559-90,763,129
(GRCh37/hg19)
Size:
5,571 bases
Orientation:
Plus strand

Genomic View for SNCA-AS1 Gene

Genes around SNCA-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNCA-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNCA-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNCA-AS1 Gene

Function for SNCA-AS1 Gene

Phenotypes From GWAS Catalog for SNCA-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNCA-AS1 Gene

Localization for SNCA-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNCA-AS1 Gene

Pathways & Interactions for SNCA-AS1 Gene

SuperPathways for SNCA-AS1 Gene

No Data Available

Interacting Proteins for SNCA-AS1 Gene

Gene Ontology (GO) - Biological Process for SNCA-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNCA-AS1 Gene

Drugs & Compounds for SNCA-AS1 Gene

No Compound Related Data Available

Transcripts for SNCA-AS1 Gene

mRNA/cDNA for SNCA-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SNCA-AS1 Gene

No ASD Table

Relevant External Links for SNCA-AS1 Gene

GeneLoc Exon Structure for
SNCA-AS1
ECgene alternative splicing isoforms for
SNCA-AS1

Expression for SNCA-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNCA-AS1 Gene

genes like me logo Genes that share expression patterns with SNCA-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNCA-AS1 Gene

Orthologs for SNCA-AS1 Gene

Evolution for SNCA-AS1 Gene

ENSEMBL:
Gene Tree for SNCA-AS1 (if available)
TreeFam:
Gene Tree for SNCA-AS1 (if available)

No data available for Orthologs for SNCA-AS1 Gene

Paralogs for SNCA-AS1 Gene

No data available for Paralogs for SNCA-AS1 Gene

Variants for SNCA-AS1 Gene

Sequence variations from dbSNP and Humsavar for SNCA-AS1 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs104893878 pathogenic, Parkinson disease 1 89,835,580(+) C/G upstream_transcript_variant
rs367902113 uncertain-significance, Parkinson Disease, Dominant 89,837,065(+) C/T intron_variant
rs372025454 likely-benign, Parkinson Disease, Dominant 89,837,210(+) C/T intron_variant
rs545809130 uncertain-significance, Parkinson Disease, Dominant 89,836,947(+) G/A intron_variant
rs757451373 uncertain-significance, Parkinson Disease, Dominant 89,837,155(+) C/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SNCA-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1012406 CNV loss 25217958
nsv461576 CNV gain 19166990
nsv594806 CNV gain 21841781

Additional Variant Information for SNCA-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNCA-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNCA-AS1 Gene

Disorders for SNCA-AS1 Gene

Additional Disease Information for SNCA-AS1

No disorders were found for SNCA-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNCA-AS1 Gene

Publications for SNCA-AS1 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 58

Products for SNCA-AS1 Gene

Sources for SNCA-AS1 Gene

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