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SNCA-AS1 (SNCA Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH04J089837 | Promoter/Enhancer | 1.8 | EPDnew Ensembl ENCODE CraniofacialAtlas | 250.7 | +0.6 | 601 | 3.6 | ZSCAN16 ZNF610 ZNF513 CTCF ZNF341 ZNF843 KLF9 SP2 TAL1 KLF16 | SNCA SNCA-AS1 GPRIN3 | |
GH04J089799 | Enhancer | 0.6 | Ensembl ENCODE | 6.2 | -35.8 | -35799 | 4 | JUND ZNF366 EP300 | MMRN1 SNCA-AS1 SNCA piR-50852-111 lnc-MMRN1-3 GPRIN3 | |
GH04J089829 | Enhancer | 0.6 | ENCODE | 0.4 | -6.5 | -6536 | 0.8 | SPI1 ELF1 IKZF1 ATF7 RAD51 IKZF2 MTA2 DPF2 RELB ETV6 | SNCA SNCA-AS1 piR-50852-111 GPRIN3 | |
GH04J089819 | Enhancer | 0.5 | Ensembl | 0.4 | -15.8 | -15799 | 2.8 | SPI1 ATF2 ZNF366 ZNF512 ATF7 PRDM1 | SNCA MMRN1 SNCA-AS1 piR-50852-111 GPRIN3 | |
GH04J089797 | Enhancer | 0.5 | Ensembl ENCODE | 0.3 | -38.9 | -38900 | 0.6 | JUND EP300 | piR-50852-111 lnc-MMRN1-3 SNCA-AS1 SNCA GPRIN3 |
RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
---|---|---|---|---|
URS000041475A_9606 | lncRNA | 2646 | 3 |
Ensembl: ENST00000501215 (view in UCSC) , LNCipedia: SNCA-AS1:3, NONCODE: NONHSAT097404.2, |
URS000075B38D_9606 | lncRNA | 825 | 3 |
RefSeq: NR_045481, LNCipedia: SNCA-AS1:1, NONCODE: NONHSAT097403.2, |
URS000046C31B_9606 | lncRNA | 801 | 2 |
Ensembl: ENST00000513653 (view in UCSC) , LNCipedia: SNCA-AS1:2, |
URS0001BDF63E_9606 | lncRNA | 4435 | 1 |
LncBook: HSALNT0074994, |
URS0001BF77E5_9606 | lncRNA | 3060 | 1 |
LncBook: HSALNT0074995, |
SNP ID | Clinical significance and condition | Chr 04 pos | Variation | AA Info | Type |
---|---|---|---|---|---|
904211 | Uncertain Significance: Parkinson Disease, Dominant | 89,836,955(+) |
C/T NM_000345.4(SNCA):c.-26+7G>A |
NON_CODING_TRANSCRIPT_VARIANT,FIVE_PRIME_UTR_VARIANT,INTRON | |
904212 | Uncertain Significance: Parkinson Disease, Dominant | 89,837,051(+) |
G/C NM_000345.4(SNCA):c.-115C>G |
NON_CODING_TRANSCRIPT_VARIANT,FIVE_PRIME_UTR_VARIANT,INTRON | |
904994 | Uncertain Significance: Parkinson Disease, Dominant | 89,837,063(+) |
G/A NM_000345.4(SNCA):c.-127C>T |
NON_CODING_TRANSCRIPT_VARIANT,FIVE_PRIME_UTR_VARIANT,INTRON | |
rs1560562993 | Uncertain Significance: Parkinson Disease, Dominant | 89,836,961(+) |
C/T NM_000345.4(SNCA):c.-26+1G>A |
SPLICE_DONOR_VARIANT,FIVE_PRIME_UTR_VARIANT,INTRON | |
rs367902113 | Uncertain Significance: Parkinson Disease, Dominant | 89,837,065(+) |
C/T NM_000345.4(SNCA):c.-129G>A |
FIVE_PRIME_UTR_VARIANT,INTRON |
No disorders were found for SNCA-AS1 Gene.