Aliases for SNCA-AS1 Gene

Data sources for SNCA-AS1 Gene:

Subcategory (RNA class) for SNCA-AS1 Gene

lncRNA

Aliases for SNCA-AS1 Gene

External Ids for SNCA-AS1 Gene

Summaries for SNCA-AS1 Gene

GeneCards Summary for SNCA-AS1 Gene

SNCA-AS1 (SNCA Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SNCA-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SNCA-AS1 Gene

Genomics for SNCA-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNCA-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J089837 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas 250.7 +0.6 601 3.6 ZSCAN16 ZNF610 ZNF513 CTCF ZNF341 ZNF843 KLF9 SP2 TAL1 KLF16 SNCA SNCA-AS1 GPRIN3
GH04J089799 Enhancer 0.6 Ensembl ENCODE 6.2 -35.8 -35799 4 JUND ZNF366 EP300 MMRN1 SNCA-AS1 SNCA piR-50852-111 lnc-MMRN1-3 GPRIN3
GH04J089829 Enhancer 0.6 ENCODE 0.4 -6.5 -6536 0.8 SPI1 ELF1 IKZF1 ATF7 RAD51 IKZF2 MTA2 DPF2 RELB ETV6 SNCA SNCA-AS1 piR-50852-111 GPRIN3
GH04J089819 Enhancer 0.5 Ensembl 0.4 -15.8 -15799 2.8 SPI1 ATF2 ZNF366 ZNF512 ATF7 PRDM1 SNCA MMRN1 SNCA-AS1 piR-50852-111 GPRIN3
GH04J089797 Enhancer 0.5 Ensembl ENCODE 0.3 -38.9 -38900 0.6 JUND EP300 piR-50852-111 lnc-MMRN1-3 SNCA-AS1 SNCA GPRIN3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNCA-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SNCA-AS1 Gene

Latest Assembly
chr4:89,836,400-89,842,300
(GRCh38/hg38)
Size:
5,901 bases
Orientation:
Plus strand

Previous Assembly
chr4:90,757,552-90,763,142
(GRCh37/hg19 by Entrez Gene)
Size:
5,591 bases
Orientation:
Plus strand

chr4:90,757,559-90,763,129
(GRCh37/hg19 by Ensembl)
Size:
5,571 bases
Orientation:
Plus strand

Genomic View for SNCA-AS1 Gene

Genes around SNCA-AS1 on UCSC Golden Path with GeneCards custom track
SNCA-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SNCA-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNCA-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNCA-AS1 Gene

Proteins for SNCA-AS1 Gene

Post-translational modifications for SNCA-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNCA-AS1 Gene

Domains & Families for SNCA-AS1 Gene

Gene Families for SNCA-AS1 Gene

genes like me logo Genes that share domains with SNCA-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNCA-AS1 Gene

Function for SNCA-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNCA-AS1 Gene

Localization for SNCA-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNCA-AS1 Gene

Pathways & Interactions for SNCA-AS1 Gene

PathCards logo

SuperPathways for SNCA-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNCA-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNCA-AS1 Gene

Drugs & Compounds for SNCA-AS1 Gene

No Compound Related Data Available

Transcripts for SNCA-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNCA-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000041475A_9606 lncRNA 2646 3

Ensembl: ENST00000501215 (view in UCSC) ,

LNCipedia: SNCA-AS1:3,

NONCODE: NONHSAT097404.2,

URS000075B38D_9606 lncRNA 825 3

RefSeq: NR_045481,

LNCipedia: SNCA-AS1:1,

NONCODE: NONHSAT097403.2,

URS000046C31B_9606 lncRNA 801 2

Ensembl: ENST00000513653 (view in UCSC) ,

LNCipedia: SNCA-AS1:2,

URS0001BDF63E_9606 lncRNA 4435 1

LncBook: HSALNT0074994,

URS0001BF77E5_9606 lncRNA 3060 1

LncBook: HSALNT0074995,

SNCA-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SNCA-AS1 Gene

8 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SNCA-AS1 Gene

No ASD Table

Relevant External Links for SNCA-AS1 Gene

GeneLoc Exon Structure for
SNCA-AS1

Expression for SNCA-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNCA-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNCA-AS1

genes like me logo Genes that share expression patterns with SNCA-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNCA-AS1 Gene

Orthologs for SNCA-AS1 Gene

Evolution for SNCA-AS1 Gene

ENSEMBL:
Gene Tree for SNCA-AS1 (if available)
TreeFam:
Gene Tree for SNCA-AS1 (if available)

No data available for Orthologs for SNCA-AS1 Gene

Paralogs for SNCA-AS1 Gene

No data available for Paralogs for SNCA-AS1 Gene

Variants for SNCA-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for SNCA-AS1 Gene

SNP ID Clinical significance and condition Chr 04 pos Variation AA Info Type
904211 Uncertain Significance: Parkinson Disease, Dominant 89,836,955(+) C/T
NM_000345.4(SNCA):c.-26+7G>A
NON_CODING_TRANSCRIPT_VARIANT,FIVE_PRIME_UTR_VARIANT,INTRON
904212 Uncertain Significance: Parkinson Disease, Dominant 89,837,051(+) G/C
NM_000345.4(SNCA):c.-115C>G
NON_CODING_TRANSCRIPT_VARIANT,FIVE_PRIME_UTR_VARIANT,INTRON
904994 Uncertain Significance: Parkinson Disease, Dominant 89,837,063(+) G/A
NM_000345.4(SNCA):c.-127C>T
NON_CODING_TRANSCRIPT_VARIANT,FIVE_PRIME_UTR_VARIANT,INTRON
rs1560562993 Uncertain Significance: Parkinson Disease, Dominant 89,836,961(+) C/T
NM_000345.4(SNCA):c.-26+1G>A
SPLICE_DONOR_VARIANT,FIVE_PRIME_UTR_VARIANT,INTRON
rs367902113 Uncertain Significance: Parkinson Disease, Dominant 89,837,065(+) C/T
NM_000345.4(SNCA):c.-129G>A
FIVE_PRIME_UTR_VARIANT,INTRON

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SNCA-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for SNCA-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1012406 CNV loss 25217958
nsv461576 CNV gain 19166990
nsv594806 CNV gain 21841781

Additional Variant Information for SNCA-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNCA-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNCA-AS1 Gene

Disorders for SNCA-AS1 Gene

Additional Disease Information for SNCA-AS1

No disorders were found for SNCA-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNCA-AS1 Gene

Publications for SNCA-AS1 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3

Products for SNCA-AS1 Gene

Sources for SNCA-AS1 Gene