Aliases for SNAR-I Gene

Subcategory (RNA class) for SNAR-I Gene

snRNA

Aliases for SNAR-I Gene

  • Small NF90 (ILF3) Associated RNA I 2 3
  • Small ILF3/NF90-Associated RNA 3 2 3
  • Small ILF3/NF90-Associated RNA I 2 3
  • SnaR-3 2 3
  • SNAR-I 2

External Ids for SNAR-I Gene

Previous GeneCards Identifiers for SNAR-I Gene

  • GC03U901118
  • GC03P190595

Summaries for SNAR-I Gene

GeneCards Summary for SNAR-I Gene

SNAR-I (Small NF90 (ILF3) Associated RNA I) is an RNA Gene, and is affiliated with the snRNA class.

Additional gene information for SNAR-I Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SNAR-I Gene

Genomics for SNAR-I Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNAR-I Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J190862 Promoter/Enhancer 1.1 Ensembl ENCODE 0.4 -15.0 -15029 2.2 CREB1 PRDM10 ZNF629 RFX5 PRDM1 ZIC2 SP1 ZFX ZNF561 SP2 SNAR-I GMNC lnc-IL1RAP-2 LOC100131685 ENSG00000214147 IL1RAP
GH03J190853 Enhancer 0.5 Ensembl 0.4 -23.7 -23729 1.6 SP1 CEBPB ATF3 ZBTB33 JUND SPI1 RAD21 HNF4A RXRA LOC100131685 ENSG00000214147 lnc-IL1RAP-2 SNAR-I GMNC IL1RAP
GH03J190849 Enhancer 0.2 Ensembl 0.3 -28.6 -28629 0.2 ENSG00000214147 lnc-IL1RAP-2 LOC100131685 SNAR-I GMNC IL1RAP
GH03J190847 Enhancer 0.2 Ensembl 0.3 -30.4 -30429 0.6 ENSG00000214147 lnc-IL1RAP-2 LOC100131685 SNAR-I GMNC IL1RAP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNAR-I on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNAR-I gene promoter:
  • AML1a
  • Chx10
  • FOXO3
  • FOXO3a
  • FOXO3b
  • HTF
  • NRSF form 1
  • NRSF form 2
  • Oct-B1
  • oct-B2

Genomic Locations for SNAR-I Gene

Genomic Locations for SNAR-I Gene
chr3:190,877,930-190,878,050
(GRCh38/hg38)
Size:
121 bases
Orientation:
Plus strand
chr3:190,595,719-190,595,839
(GRCh37/hg19)
Size:
121 bases
Orientation:
Plus strand

Genomic View for SNAR-I Gene

Genes around SNAR-I on UCSC Golden Path with GeneCards custom track
SNAR-I in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNAR-I Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNAR-I Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNAR-I Gene

Proteins for SNAR-I Gene

Post-translational modifications for SNAR-I Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNAR-I Gene

Domains & Families for SNAR-I Gene

Gene Families for SNAR-I Gene

genes like me logo Genes that share domains with SNAR-I: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNAR-I Gene

Function for SNAR-I Gene

Phenotypes From GWAS Catalog for SNAR-I Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNAR-I Gene

Localization for SNAR-I Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNAR-I gene
Compartment Confidence
extracellular 1
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNAR-I Gene

Pathways & Interactions for SNAR-I Gene

PathCards logo

SuperPathways for SNAR-I Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNAR-I Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNAR-I Gene

Drugs & Compounds for SNAR-I Gene

No Compound Related Data Available

Transcripts for SNAR-I Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNAR-I Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075BAB5_9606 snRNA 121 2

HGNC: 34330,

RefSeq: NR_024343,

SNAR-I in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNAR-I Gene

No ASD Table

Relevant External Links for SNAR-I Gene

GeneLoc Exon Structure for
SNAR-I

No data available for mRNA/cDNA for SNAR-I Gene

Expression for SNAR-I Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNAR-I

SOURCE GeneReport for Unigene cluster for SNAR-I Gene:

Hs.717310
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNAR-I Gene

Orthologs for SNAR-I Gene

No data available for Orthologs and Evolution for SNAR-I Gene

Paralogs for SNAR-I Gene

No data available for Paralogs for SNAR-I Gene

Variants for SNAR-I Gene

Additional dbSNP identifiers (rs#s) for SNAR-I Gene

Structural Variations from Database of Genomic Variants (DGV) for SNAR-I Gene

Variant ID Type Subtype PubMed ID
esv3893843 CNV gain 25118596
nsv963392 CNV duplication 23825009

Additional Variant Information for SNAR-I Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNAR-I

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNAR-I Gene

Disorders for SNAR-I Gene

Additional Disease Information for SNAR-I

No disorders were found for SNAR-I Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNAR-I Gene

Publications for SNAR-I Gene

  1. Novel rapidly evolving hominid RNAs bind nuclear factor 90 and display tissue-restricted distribution. (PMID: 17855395) Parrott AM … Mathews MB (Nucleic acids research 2007) 2 3
  2. GWAS of cerebrospinal fluid tau levels identifies risk variants for Alzheimer's disease. (PMID: 23562540) Cruchaga C … Goate AM (Neuron 2013) 3

Products for SNAR-I Gene

Sources for SNAR-I Gene