Aliases for SNAR-F Gene

Data sources for SNAR-F Gene:

Subcategory (RNA class) for SNAR-F Gene

snRNA

Aliases for SNAR-F Gene

External Ids for SNAR-F Gene

Previous GeneCards Identifiers for SNAR-F Gene

  • GC19U900755
  • GC19P051108

Summaries for SNAR-F Gene

GeneCards Summary for SNAR-F Gene

SNAR-F (Small NF90 (ILF3) Associated RNA F) is an RNA Gene, and is affiliated with the snRNA class.

Additional gene information for SNAR-F Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SNAR-F Gene

Genomics for SNAR-F Gene

GeneHancer (GH) Regulatory Elements Pubs


Top Transcription factor binding sites by QIAGEN in the SNAR-F gene promoter:
  • Bach2
  • c-Jun
  • C/EBPalpha
  • CBF(2)
  • CBF-A
  • CBF-B
  • CP1A
  • NF-Y
  • NF-YA
  • NF-YB

Genomic Locations for SNAR-F Gene

Latest Assembly
chr19:50,604,963-50,605,085
(GRCh38/hg38)
Size:
123 bases
Orientation:
Plus strand

Previous Assembly
chr19:51,108,220-51,108,342
(GRCh37/hg19 by Entrez Gene)
Size:
123 bases
Orientation:
Plus strand

Genomic View for SNAR-F Gene

Genes around SNAR-F on UCSC Golden Path with GeneCards custom track
SNAR-F in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SNAR-F Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNAR-F Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNAR-F Gene

Proteins for SNAR-F Gene

Post-translational modifications for SNAR-F Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNAR-F Gene

Domains & Families for SNAR-F Gene

Gene Families for SNAR-F Gene

genes like me logo Genes that share domains with SNAR-F: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNAR-F Gene

Function for SNAR-F Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNAR-F Gene

Localization for SNAR-F Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNAR-F gene
Compartment Confidence
plasma membrane 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNAR-F Gene

Pathways & Interactions for SNAR-F Gene

PathCards logo

SuperPathways for SNAR-F Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNAR-F Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNAR-F Gene

Drugs & Compounds for SNAR-F Gene

No Compound Related Data Available

Transcripts for SNAR-F Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNAR-F Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000028A228_9606 snRNA 123 2

RefSeq: NR_004384,

ENA: EU071073.1:1..123:ncRNA,

SNAR-F in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SNAR-F Gene

No ASD Table

Relevant External Links for SNAR-F Gene

GeneLoc Exon Structure for
SNAR-F

No data available for mRNA/cDNA for SNAR-F Gene

Expression for SNAR-F Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNAR-F

SOURCE GeneReport for Unigene cluster for SNAR-F Gene:

Hs.707968
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNAR-F Gene

Orthologs for SNAR-F Gene

No data available for Orthologs and Evolution for SNAR-F Gene

Paralogs for SNAR-F Gene

No data available for Paralogs for SNAR-F Gene

Variants for SNAR-F Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SNAR-F Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for SNAR-F Gene

Variant ID Type Subtype PubMed ID
dgv6513n54 CNV gain 21841781
esv25869 CNV loss 19812545
esv3583461 CNV loss 25503493
nsv1065222 CNV loss 25217958
nsv1112748 CNV deletion 24896259
nsv1133010 OTHER inversion 24896259
nsv1140251 OTHER inversion 24896259
nsv1152956 OTHER inversion 26484159
nsv512587 CNV loss 21212237
nsv579949 CNV loss 21841781

Additional Variant Information for SNAR-F Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNAR-F

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNAR-F Gene

Disorders for SNAR-F Gene

Additional Disease Information for SNAR-F

No disorders were found for SNAR-F Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNAR-F Gene

Publications for SNAR-F Gene

  1. Novel rapidly evolving hominid RNAs bind nuclear factor 90 and display tissue-restricted distribution. (PMID: 17855395) Parrott AM … Mathews MB (Nucleic acids research 2007) 2 3

Products for SNAR-F Gene

Sources for SNAR-F Gene