Aliases for SNAR-E Gene

Subcategory (RNA class) for SNAR-E Gene

snRNA

Quality Score for this RNA gene is

12

Aliases for SNAR-E Gene

  • Small NF90 (ILF3) Associated RNA E 2 3
  • Small ILF3/NF90-Associated RNA E 2 3
  • SNAR-E 2

External Ids for SNAR-E Gene

Previous GeneCards Identifiers for SNAR-E Gene

  • GC19U900948
  • GC19M047333

Summaries for SNAR-E Gene

GeneCards Summary for SNAR-E Gene

SNAR-E (Small NF90 (ILF3) Associated RNA E) is an RNA Gene, and is affiliated with the snRNA class.

Rfam classification for SNAR-E Gene

Additional gene information for SNAR-E Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNAR-E Gene

Genomics for SNAR-E Gene

GeneHancer (GH) Regulatory Elements for SNAR-E Gene

Promoters and enhancers for SNAR-E Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J046828 Enhancer 0.8 ENCODE 750.6 +0.9 887 2.1 CTCF MNT ZNF652 SP1 ZNF384 IKZF1 CREB1 POLR2A TARDBP GATAD2A ENSG00000269014 SNAR-E lnc-AP2S1-1 STRN4 FKRP PRKD2 ARHGAP35 SLC1A5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNAR-E on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNAR-E gene promoter:
  • AML1a
  • CUTL1
  • E47
  • Evi-1
  • HNF-4alpha1
  • HTF
  • Pax-4a
  • POU2F1
  • POU2F1a
  • STAT5A

Genomic Locations for SNAR-E Gene

Genomic Locations for SNAR-E Gene
chr19:46,830,585-46,830,704
(GRCh38/hg38)
Size:
120 bases
Orientation:
Minus strand
chr19:47,333,842-47,333,961
(GRCh37/hg19)
Size:
120 bases
Orientation:
Minus strand

Genomic View for SNAR-E Gene

Genes around SNAR-E on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNAR-E Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNAR-E Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNAR-E Gene

Proteins for SNAR-E Gene

Post-translational modifications for SNAR-E Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNAR-E Gene

Domains & Families for SNAR-E Gene

Gene Families for SNAR-E Gene

genes like me logo Genes that share domains with SNAR-E: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNAR-E Gene

Function for SNAR-E Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNAR-E Gene

Localization for SNAR-E Gene

Gene Ontology (GO) - Cellular Components for SNAR-E Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with SNAR-E: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNAR-E Gene

Pathways & Interactions for SNAR-E Gene

PathCards logo

SuperPathways for SNAR-E Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNAR-E Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNAR-E Gene

Drugs & Compounds for SNAR-E Gene

No Compound Related Data Available

Transcripts for SNAR-E Gene

mRNA/cDNA for SNAR-E Gene

(1) REFSEQ mRNAs :
(1) RNACentral transcripts :
(1) ENA transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNAR-E Gene

No ASD Table

Relevant External Links for SNAR-E Gene

GeneLoc Exon Structure for
SNAR-E
ECgene alternative splicing isoforms for
SNAR-E

Expression for SNAR-E Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNAR-E Gene

mRNA expression in normal human tissues for SNAR-E Gene

SOURCE GeneReport for Unigene cluster for SNAR-E Gene:

Hs.541243
genes like me logo Genes that share expression patterns with SNAR-E: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNAR-E Gene

Orthologs for SNAR-E Gene

No data available for Orthologs and Evolution for SNAR-E Gene

Paralogs for SNAR-E Gene

No data available for Paralogs for SNAR-E Gene

Variants for SNAR-E Gene

Sequence variations from dbSNP and Humsavar for SNAR-E Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000897263 -- 46,830,468(-) C/A downstream_transcript_variant
rs1000952343 -- 46,830,925(-) A/C upstream_transcript_variant
rs1002750166 -- 46,832,242(-) C/T upstream_transcript_variant
rs1003110090 -- 46,832,520(-) A/G/T upstream_transcript_variant
rs1003338214 -- 46,830,557(-) A/C downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNAR-E Gene

Variant ID Type Subtype PubMed ID
dgv3608n100 CNV gain 25217958
esv3583444 CNV loss 25503493
esv3893224 CNV gain 25118596
nsv1065221 CNV gain 25217958
nsv833850 CNV loss 17160897

Additional Variant Information for SNAR-E Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNAR-E

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNAR-E Gene

Disorders for SNAR-E Gene

Additional Disease Information for SNAR-E

No disorders were found for SNAR-E Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNAR-E Gene

Publications for SNAR-E Gene

  1. Novel rapidly evolving hominid RNAs bind nuclear factor 90 and display tissue-restricted distribution. (PMID: 17855395) Parrott AM … Mathews MB (Nucleic acids research 2007) 2 3 56
  2. Yeast Two-Hybrid and One-Hybrid Screenings Identify Regulators of hsp70 Gene Expression. (PMID: 26873636) Saito Y … Nakayama Y (Journal of cellular biochemistry 2016) 3 56
  3. Direct targeting of membrane fusion by SNARE mimicry: Convergent evolution of Legionella effectors. (PMID: 27436892) Shi X … Shuman HA (Proceedings of the National Academy of Sciences of the United States of America 2016) 3 56
  4. SNARE protein expression and localization in human cytotoxic T lymphocytes. (PMID: 22120889) Pattu V … Hoth M (European journal of immunology 2012) 3 56
  5. Munc18c phosphorylation by the insulin receptor links cell signaling directly to SNARE exocytosis. (PMID: 21444687) Jewell JL … Thurmond DC (The Journal of cell biology 2011) 3 56

Products for SNAR-E Gene

Sources for SNAR-E Gene