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Aliases for SNAR-E Gene

Subcategory (RNA class) for SNAR-E Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for SNAR-E Gene

  • Small ILF3/NF90-Associated RNA E 2 3

External Ids for SNAR-E Gene

Previous GeneCards Identifiers for SNAR-E Gene

  • GC19U900948
  • GC19M047333

Summaries for SNAR-E Gene

GeneCards Summary for SNAR-E Gene

SNAR-E (Small ILF3/NF90-Associated RNA E) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SNAR-E Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNAR-E Gene

Genomics for SNAR-E Gene

GeneHancer (GH) Regulatory Elements for SNAR-E Gene

Promoters and enhancers for SNAR-E Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I046828 Enhancer 1 Ensembl ENCODE 550.8 +0.9 887 2.1 PKNOX1 ZSCAN4 SIN3A MZF1 FEZF1 ZEB1 ZNF391 FOS RCOR1 SMARCA5 ENSG00000269014 SNAR-E STRN4 FKRP PRKD2 ARHGAP35 SLC1A5
GH19I046839 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -10.2 -10225 3.2 PKNOX1 ATF1 ARID4B SIN3A ZNF766 ZNF143 REST ZNF592 GLIS1 SP7 CCDC61 SYMPK STRN4 ZC3H4 AP2S1 GAPDHP38 PIR58352 SNAR-E
GH19I046843 Enhancer 0.9 ENCODE 0.4 -13.3 -13333 1.6 HDGF ARNT TCF12 GATA2 ATF7 NCOA1 REST ZNF623 ZNF592 MEF2D ENSG00000268810 ZC3H4 CCDC61 SYMPK NOP53-AS1 BICRA PIR58352 AP2S1 SNAR-E
GH19I046838 Enhancer 0.3 dbSUPER 0.4 -8.0 -8049 0.8 ZNF362 GAPDHP38 SNAR-E PIR58352 AP2S1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNAR-E on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNAR-E gene promoter:

Genomic Locations for SNAR-E Gene

Genomic Locations for SNAR-E Gene
chr19:46,830,585-46,830,704
(GRCh38/hg38)
Size:
120 bases
Orientation:
Minus strand
chr19:47,333,842-47,333,961
(GRCh37/hg19)

Genomic View for SNAR-E Gene

Genes around SNAR-E on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNAR-E Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNAR-E Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNAR-E Gene

Proteins for SNAR-E Gene

Post-translational modifications for SNAR-E Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNAR-E Gene

Domains & Families for SNAR-E Gene

Gene Families for SNAR-E Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNAR-E: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNAR-E Gene

Function for SNAR-E Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNAR-E Gene

Localization for SNAR-E Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNAR-E Gene

Pathways & Interactions for SNAR-E Gene

SuperPathways for SNAR-E Gene

No Data Available

Interacting Proteins for SNAR-E Gene

Gene Ontology (GO) - Biological Process for SNAR-E Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNAR-E Gene

Drugs & Compounds for SNAR-E Gene

No Compound Related Data Available

Transcripts for SNAR-E Gene

mRNA/cDNA for SNAR-E Gene

(1) Additional mRNA sequences :

Unigene Clusters for SNAR-E Gene

Small ILF3/NF90-associated RNA E:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNAR-E Gene

No ASD Table

Relevant External Links for SNAR-E Gene

GeneLoc Exon Structure for
SNAR-E
ECgene alternative splicing isoforms for
SNAR-E

Expression for SNAR-E Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNAR-E Gene

mRNA expression in normal human tissues for SNAR-E Gene

SOURCE GeneReport for Unigene cluster for SNAR-E Gene:

Hs.541243
genes like me logo Genes that share expression patterns with SNAR-E: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNAR-E Gene

Orthologs for SNAR-E Gene

No data available for Orthologs and Evolution for SNAR-E Gene

Paralogs for SNAR-E Gene

No data available for Paralogs for SNAR-E Gene

Variants for SNAR-E Gene

Sequence variations from dbSNP and Humsavar for SNAR-E Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000897263 -- 46,830,468(-) C/A downstream_transcript_variant
rs1000952343 -- 46,830,925(-) A/C upstream_transcript_variant
rs1002750166 -- 46,832,242(-) C/T upstream_transcript_variant
rs1003110090 -- 46,832,520(-) A/G upstream_transcript_variant
rs1003338214 -- 46,830,557(-) A/C downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNAR-E Gene

Variant ID Type Subtype PubMed ID
nsv833850 CNV loss 17160897
nsv1065221 CNV gain 25217958
esv3893224 CNV gain 25118596
esv3583444 CNV loss 25503493
dgv3608n100 CNV gain 25217958

Additional Variant Information for SNAR-E Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNAR-E

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNAR-E Gene

Disorders for SNAR-E Gene

Additional Disease Information for SNAR-E

No disorders were found for SNAR-E Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNAR-E Gene

Publications for SNAR-E Gene

  1. Yeast Two-Hybrid and One-Hybrid Screenings Identify Regulators of hsp70 Gene Expression. (PMID: 26873636) Saito Y … Nakayama Y (Journal of cellular biochemistry 2016) 3 58
  2. SNARE protein expression and localization in human cytotoxic T lymphocytes. (PMID: 22120889) Pattu V … Hoth M (European journal of immunology 2012) 3 58
  3. Munc18c phosphorylation by the insulin receptor links cell signaling directly to SNARE exocytosis. (PMID: 21444687) Jewell JL … Thurmond DC (The Journal of cell biology 2011) 3 58
  4. Novel rapidly evolving hominid RNAs bind nuclear factor 90 and display tissue-restricted distribution. (PMID: 17855395) Parrott AM … Mathews MB (Nucleic acids research 2007) 3 58
  5. Direct targeting of membrane fusion by SNARE mimicry: Convergent evolution of Legionella effectors. (PMID: 27436892) Shi X … Shuman HA (Proceedings of the National Academy of Sciences of the United States of America 2016) 3

Products for SNAR-E Gene

Sources for SNAR-E Gene

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