Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNAR-B2 Gene

Subcategory (RNA class) for SNAR-B2 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for SNAR-B2 Gene

  • Small ILF3/NF90-Associated RNA B2 2 3

External Ids for SNAR-B2 Gene

Previous GeneCards Identifiers for SNAR-B2 Gene

  • GC19U900862
  • GC19M050642

Summaries for SNAR-B2 Gene

GeneCards Summary for SNAR-B2 Gene

SNAR-B2 (Small ILF3/NF90-Associated RNA B2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SNAR-B2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNAR-B2 Gene

Genomics for SNAR-B2 Gene

GeneHancer (GH) Regulatory Elements for SNAR-B2 Gene

Promoters and enhancers for SNAR-B2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I050136 Enhancer 0.8 FANTOM5 0.8 +2.3 2322 0.2 SIN3A ZNF2 ZEB1 ZNF335 ZNF121 ZNF366 POLR3A KLF13 ZNF362 SP3 PRR12 AKT1S1 SCAF1 NUP62 PTOV1 KCNC3 SNAR-B1 SNAR-B2
GH19I050137 Enhancer 0.7 ENCODE 0.8 +2.1 2118 0.2 SIN3A ZNF384 ZNF2 ZNF324 ZNF335 ZNF366 POLR3A PRDM10 ZNF600 KLF8 SCAF1 PRR12 PTOV1 SNAR-B1 SNAR-B2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNAR-B2 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNAR-B2 gene promoter:

Genomic Locations for SNAR-B2 Gene

Genomic Locations for SNAR-B2 Gene
chr19:50,139,118-50,139,237
(GRCh38/hg38)
Size:
120 bases
Orientation:
Minus strand
chr19:50,642,375-50,642,494
(GRCh37/hg19)

Genomic View for SNAR-B2 Gene

Genes around SNAR-B2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNAR-B2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNAR-B2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNAR-B2 Gene

Proteins for SNAR-B2 Gene

Post-translational modifications for SNAR-B2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNAR-B2 Gene

Domains & Families for SNAR-B2 Gene

Gene Families for SNAR-B2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNAR-B2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNAR-B2 Gene

Function for SNAR-B2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNAR-B2 Gene

Localization for SNAR-B2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNAR-B2 Gene

Pathways & Interactions for SNAR-B2 Gene

SuperPathways for SNAR-B2 Gene

No Data Available

Interacting Proteins for SNAR-B2 Gene

Gene Ontology (GO) - Biological Process for SNAR-B2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNAR-B2 Gene

Drugs & Compounds for SNAR-B2 Gene

No Compound Related Data Available

Transcripts for SNAR-B2 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNAR-B2 Gene

No ASD Table

Relevant External Links for SNAR-B2 Gene

GeneLoc Exon Structure for
SNAR-B2
ECgene alternative splicing isoforms for
SNAR-B2

No data available for mRNA/cDNA for SNAR-B2 Gene

Expression for SNAR-B2 Gene

SOURCE GeneReport for Unigene cluster for SNAR-B2 Gene:

Hs.723095
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNAR-B2 Gene

Orthologs for SNAR-B2 Gene

No data available for Orthologs and Evolution for SNAR-B2 Gene

Paralogs for SNAR-B2 Gene

No data available for Paralogs for SNAR-B2 Gene

Variants for SNAR-B2 Gene

Sequence variations from dbSNP and Humsavar for SNAR-B2 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1001364901 -- 50,140,667(-) C/T upstream_transcript_variant
rs1003433500 -- 50,140,720(-) T/G upstream_transcript_variant
rs1003817792 -- 50,139,198(-) C/G non_coding_transcript_variant
rs1004710567 -- 50,141,188(-) G/A/C/T upstream_transcript_variant
rs1005217249 -- 50,140,879(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNAR-B2 Gene

Variant ID Type Subtype PubMed ID
dgv2020e59 CNV duplication 20981092
esv24726 CNV gain+loss 19812545
esv2751796 CNV gain 17911159
esv2758766 CNV loss 17122850
nsv978834 CNV duplication 23825009
nsv9739 CNV gain+loss 18304495
nsv953602 CNV duplication 24416366
nsv820746 CNV deletion 20802225
nsv509749 CNV insertion 20534489
nsv469748 CNV gain+loss 16826518
nsv428369 CNV loss 18775914
nsv2526 CNV insertion 18451855
nsv1153134 CNV duplication 26484159
nsv1152956 OTHER inversion 26484159
nsv1141337 CNV duplication 24896259
nsv1140251 OTHER inversion 24896259
nsv1133010 OTHER inversion 24896259
nsv1078447 CNV duplication 25765185
nsv1067191 CNV gain 25217958
esv3342775 CNV duplication 20981092

Additional Variant Information for SNAR-B2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNAR-B2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNAR-B2 Gene

Disorders for SNAR-B2 Gene

Additional Disease Information for SNAR-B2

No disorders were found for SNAR-B2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNAR-B2 Gene

Publications for SNAR-B2 Gene

  1. The non-coding B2 RNA binds to the DNA cleft and active-site region of RNA polymerase II. (PMID: 23416138) Ponicsan SL … Kugel JF (Journal of molecular biology 2013) 3 58
  2. Novel rapidly evolving hominid RNAs bind nuclear factor 90 and display tissue-restricted distribution. (PMID: 17855395) Parrott AM … Mathews MB (Nucleic acids research 2007) 3 58

Products for SNAR-B2 Gene

Sources for SNAR-B2 Gene

Content
Loading form....