Aliases for SNAR-A3 Gene

Subcategory (RNA class) for SNAR-A3 Gene

snRNA

Number of RNA Genes sources:

2 / 17

Aliases for SNAR-A3 Gene

  • Small NF90 (ILF3) Associated RNA A3 2 3
  • Small Nuclear ILF3/NF90-Associated RNA A3 2 3
  • Small ILF3/NF90-Associated RNA A3 2 3
  • SnaR-A53118848 2 3
  • SNAR-A10 2
  • SNAR-A14 2
  • SNAR-A11 2
  • SNAR-A8 2
  • SNAR-A7 2
  • SNAR-A2 2
  • SNAR-A1 2
  • RF02556 168
  • SNAR-A4 2
  • SNAR-A3 2
  • SNAR-A6 2
  • SNAR-A5 2
  • SNAR-A9 2

External Ids for SNAR-A3 Gene

Previous GeneCards Identifiers for SNAR-A3 Gene

  • GC19U900919
  • GC19P048427
  • GC19M046980

Summaries for SNAR-A3 Gene

GeneCards Summary for SNAR-A3 Gene

SNAR-A3 (Small NF90 (ILF3) Associated RNA A3) is an RNA Gene, and is affiliated with the snRNA class.

Rfam classification for SNAR-A3 Gene

Additional gene information for SNAR-A3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNAR-A3 Gene

Genomics for SNAR-A3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNAR-A3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J047925 Enhancer 0.2 Ensembl 600.7 +2.0 1953 0.7 SNAR-A3 piR-36011-003 piR-36189-003 SNAR-C2 SULT2A1 BSPH1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNAR-A3 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SNAR-A3 Gene

Genomic Locations for SNAR-A3 Gene
chr19:47,923,779-47,924,002
(GRCh38/hg38)
Size:
224 bases
Orientation:
Plus strand
chr19:48,427,036-48,427,156
(GRCh37/hg19)
Size:
121 bases
Orientation:
Plus strand

Genomic View for SNAR-A3 Gene

Genes around SNAR-A3 on UCSC Golden Path with GeneCards custom track
SNAR-A3 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNAR-A3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNAR-A3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNAR-A3 Gene

Proteins for SNAR-A3 Gene

Post-translational modifications for SNAR-A3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNAR-A3 Gene

Domains & Families for SNAR-A3 Gene

Gene Families for SNAR-A3 Gene

genes like me logo Genes that share domains with SNAR-A3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNAR-A3 Gene

Function for SNAR-A3 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNAR-A3 Gene

Localization for SNAR-A3 Gene

Gene Ontology (GO) - Cellular Components for SNAR-A3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with SNAR-A3: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNAR-A3 Gene

Pathways & Interactions for SNAR-A3 Gene

PathCards logo

SuperPathways for SNAR-A3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNAR-A3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNAR-A3 Gene

Drugs & Compounds for SNAR-A3 Gene

No Compound Related Data Available

Transcripts for SNAR-A3 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNAR-A3 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003848F7_9606 snRNA 122 3

HGNC: 34304, 34305,

RefSeq: NR_004435, NR_004436,

ENA: EU071051.1:1..122:ncRNA, EU071052.1:1..122:ncRNA,

URS00004E56CF_9606 snRNA 121 3

HGNC: 34306, 34307, 34308, 34309, 34310,

RefSeq: NR_024214, NR_024215, NR_024223, NR_024224, NR_024225,

ENA: View 9 records in RNAcentral

URS000009DCBB_9606 other 120 1

ENA: GQ259350.1:148..267:ncRNA, GQ259351.1:147..266:ncRNA, GQ259352.1:147..266:ncRNA, GQ259353.1:148..267:ncRNA,

URS00001A6302_9606 other 120 1

ENA: GQ259354.1:148..267:ncRNA,

URS00004CACDC_9606 snRNA 119 1

ENA: EU035783.1:1..121:ncRNA,

SNAR-A3 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNAR-A3 Gene

No ASD Table

Relevant External Links for SNAR-A3 Gene

GeneLoc Exon Structure for
SNAR-A3

No data available for mRNA/cDNA for SNAR-A3 Gene

Expression for SNAR-A3 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNAR-A3 Gene

Orthologs for SNAR-A3 Gene

No data available for Orthologs and Evolution for SNAR-A3 Gene

Paralogs for SNAR-A3 Gene

No data available for Paralogs for SNAR-A3 Gene

Variants for SNAR-A3 Gene

Additional dbSNP identifiers (rs#s) for SNAR-A3 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNAR-A3 Gene

Variant ID Type Subtype PubMed ID
dgv2017e59 CNV duplication 20981092
dgv2020e59 CNV duplication 20981092
esv24726 CNV gain+loss 19812545
esv2751796 CNV gain 17911159
esv2758766 CNV loss 17122850
esv28347 CNV gain+loss 19812545
esv3351443 CNV duplication 20981092
esv3396743 CNV duplication 20981092
esv3410554 CNV duplication 20981092
esv3432524 CNV duplication 20981092
esv3583447 CNV loss 25503493
esv991047 CNV gain 20482838
nsv1056164 CNV gain 25217958
nsv1058622 CNV gain 25217958
nsv1067191 CNV gain 25217958
nsv1078446 CNV duplication 25765185
nsv1078447 CNV duplication 25765185
nsv1124787 CNV duplication 24896259
nsv1133010 OTHER inversion 24896259
nsv1140251 OTHER inversion 24896259
nsv1141337 CNV duplication 24896259
nsv1152956 OTHER inversion 26484159
nsv1153134 CNV duplication 26484159
nsv178 CNV deletion 15895083
nsv2513 CNV deletion 18451855
nsv2514 CNV insertion 18451855
nsv2523 CNV insertion 18451855
nsv2524 CNV deletion 18451855
nsv2525 CNV insertion 18451855
nsv428367 CNV gain+loss 18775914
nsv428369 CNV loss 18775914
nsv469748 CNV gain+loss 16826518
nsv509748 CNV insertion 20534489
nsv509749 CNV insertion 20534489
nsv514900 CNV gain 21397061
nsv820746 CNV deletion 20802225
nsv953594 CNV duplication 24416366
nsv953601 CNV duplication 24416366
nsv953602 CNV duplication 24416366
nsv961230 CNV duplication 23825009
nsv9739 CNV gain+loss 18304495
nsv978834 CNV duplication 23825009

Additional Variant Information for SNAR-A3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNAR-A3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNAR-A3 Gene

Disorders for SNAR-A3 Gene

Additional Disease Information for SNAR-A3

No disorders were found for SNAR-A3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNAR-A3 Gene

Publications for SNAR-A3 Gene

  1. Novel rapidly evolving hominid RNAs bind nuclear factor 90 and display tissue-restricted distribution. (PMID: 17855395) Parrott AM … Mathews MB (Nucleic acids research 2007) 2 3

Products for SNAR-A3 Gene

Sources for SNAR-A3 Gene