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Aliases for SNAR-A12 Gene

Subcategory (RNA class) for SNAR-A12 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SNAR-A12 Gene

  • Small NF90 (ILF3) Associated RNA A12 2 3
  • Small Nuclear ILF3/NF90-Associated RNA A12 2 3
  • Small ILF3/NF90-Associated RNA A12 2 3
  • Small NF90-Associated RNA AA53102747 3
  • SNAR-A53102747 3

External Ids for SNAR-A12 Gene

Previous GeneCards Identifiers for SNAR-A12 Gene

  • GC19U900871
  • GC19P048410

Summaries for SNAR-A12 Gene

GeneCards Summary for SNAR-A12 Gene

SNAR-A12 (Small NF90 (ILF3) Associated RNA A12) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SNAR-A12 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNAR-A12 Gene

Genomics for SNAR-A12 Gene

GeneHancer (GH) Regulatory Elements for SNAR-A12 Gene

Promoters and enhancers for SNAR-A12 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J047890 Enhancer 1.2 Ensembl ENCODE 0.4 -15.8 -15788 3 ZFX SP1 CC2D1A ELF3 ZKSCAN8 CBFA2T2 ZNF148 POLR2A MLLT1 GTF2F1 LINC01595 BICRA ZC3H4 GRWD1 RASIP1 CCDC9 SULT2A1 SNAR-A12
GH19J047896 Enhancer 0.6 ENCODE 0.4 -10.8 -10849 1.1 SP1 RXRA FOXA2 MAFK YY1 JUND NR2F2 HNF4A MAX HNF4G SNAR-A12 SULT2A1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNAR-A12 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNAR-A12 gene promoter:
  • COUP
  • COUP-TF1
  • E47
  • HNF-1A
  • HNF-4alpha1
  • HNF-4alpha2
  • RORalpha2
  • STAT5B
  • Tal-1

Genomic Locations for SNAR-A12 Gene

Genomic Locations for SNAR-A12 Gene
122 bases
Plus strand
122 bases
Plus strand

Genomic View for SNAR-A12 Gene

Genes around SNAR-A12 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNAR-A12 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNAR-A12 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNAR-A12 Gene

Proteins for SNAR-A12 Gene

Post-translational modifications for SNAR-A12 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNAR-A12 Gene

Domains & Families for SNAR-A12 Gene

Gene Families for SNAR-A12 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNAR-A12: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNAR-A12 Gene

Function for SNAR-A12 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNAR-A12 Gene

Localization for SNAR-A12 Gene

Gene Ontology (GO) - Cellular Components for SNAR-A12 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with SNAR-A12: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNAR-A12 Gene

Pathways & Interactions for SNAR-A12 Gene

PathCards logo

SuperPathways for SNAR-A12 Gene

No Data Available

Interacting Proteins for SNAR-A12 Gene

Gene Ontology (GO) - Biological Process for SNAR-A12 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNAR-A12 Gene

Drugs & Compounds for SNAR-A12 Gene

No Compound Related Data Available

Transcripts for SNAR-A12 Gene

mRNA/cDNA for SNAR-A12 Gene

(1) RNA Central transcripts :

Unigene Clusters for SNAR-A12 Gene

Small ILF3/NF90-associated RNA A12:
Representative Sequences:

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNAR-A12 Gene

No ASD Table

Relevant External Links for SNAR-A12 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNAR-A12 Gene

SOURCE GeneReport for Unigene cluster for SNAR-A12 Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNAR-A12 Gene

Orthologs for SNAR-A12 Gene

No data available for Orthologs and Evolution for SNAR-A12 Gene

Paralogs for SNAR-A12 Gene

No data available for Paralogs for SNAR-A12 Gene

Variants for SNAR-A12 Gene

Sequence variations from dbSNP and Humsavar for SNAR-A12 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1012935129 -- 47,907,639(+) C/A upstream_transcript_variant
rs1045723767 -- 47,907,780(+) G/A non_coding_transcript_variant
rs1157082403 -- 47,906,879(+) A/C upstream_transcript_variant
rs1157207644 -- 47,906,990(+) T/C upstream_transcript_variant
rs1157264158 -- 47,907,792(+) TTTTTTTT/TTTTTTTTT non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNAR-A12 Gene

Variant ID Type Subtype PubMed ID
dgv1792n106 CNV duplication 24896259
dgv2016e59 CNV duplication 20981092
dgv2017e59 CNV duplication 20981092
esv28347 CNV gain+loss 19812545
esv3360843 CNV duplication 20981092
esv3583447 CNV loss 25503493
esv3644559 CNV gain 21293372
esv991047 CNV gain 20482838
nsv1056164 CNV gain 25217958
nsv1058622 CNV gain 25217958
nsv1078446 CNV duplication 25765185
nsv1141335 CNV duplication 24896259
nsv178 CNV deletion 15895083
nsv2513 CNV deletion 18451855
nsv2515 CNV insertion 18451855
nsv428367 CNV gain+loss 18775914
nsv509748 CNV insertion 20534489
nsv953595 CNV duplication 24416366
nsv961230 CNV duplication 23825009
nsv9739 CNV gain+loss 18304495

Additional Variant Information for SNAR-A12 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNAR-A12 Gene

Disorders for SNAR-A12 Gene

Additional Disease Information for SNAR-A12

No disorders were found for SNAR-A12 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNAR-A12 Gene

Publications for SNAR-A12 Gene

  1. Novel rapidly evolving hominid RNAs bind nuclear factor 90 and display tissue-restricted distribution. (PMID: 17855395) Parrott AM … Mathews MB (Nucleic acids research 2007) 2 3 58

No data available for External Links for SNAR-A12 Gene

Products for SNAR-A12 Gene

Sources for SNAR-A12 Gene

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