Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNAP25-AS1 Gene

Subcategory (RNA class) for SNAP25-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SNAP25-AS1 Gene

  • SNAP25 Antisense RNA 1 2 3 5
  • SNAP25 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SNAP25-AS1 Gene

Summaries for SNAP25-AS1 Gene

GeneCards Summary for SNAP25-AS1 Gene

SNAP25-AS1 (SNAP25 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SNAP25-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNAP25-AS1 Gene

Genomics for SNAP25-AS1 Gene

GeneHancer (GH) Regulatory Elements for SNAP25-AS1 Gene

Promoters and enhancers for SNAP25-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I010369 Enhancer 1.1 Ensembl ENCODE dbSUPER 550.8 -1.2 -1157 0.7 GTF2F1 TAF1 SIN3A SLC30A9 FOSL2 ZNF3 NFIA ELF1 REST GABPA SNAP25-AS1 PIR54559 GC20M010360 SDAD1P2
GH20I010370 Enhancer 1.1 ENCODE dbSUPER 550.8 -1.8 -1772 0.2 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF48 YY1 TCF12 SLC30A9 ATF7 GC20M010360 SNAP25-AS1 SDAD1P2
GH20I010367 Enhancer 0.4 ENCODE 550.8 +1.6 1578 0.1 JUN ZNF7 GC20M010360 PIR54559 SNAP25-AS1 RPL23AP6
GH20I010074 Enhancer 1.1 Ensembl ENCODE dbSUPER 10.8 +292.1 292146 4.8 SOX13 CTCF MXI1 JUN MAX SIN3A ZNF384 EBF1 RAD21 FOSL1 ANKEF1 SNAP25-AS1 GC20M010116 ENSG00000276525
GH20I010240 Enhancer 0.4 ENCODE 11.7 +127.9 127908 0.2 CTCF POLR2A SNAP25-AS1 SNAP25 GC20M010220 GC20M010223 GC20P010311
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNAP25-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNAP25-AS1 Gene

Genomic Locations for SNAP25-AS1 Gene
346,799 bases
Minus strand

Genomic View for SNAP25-AS1 Gene

Genes around SNAP25-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNAP25-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNAP25-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNAP25-AS1 Gene

Proteins for SNAP25-AS1 Gene

Post-translational modifications for SNAP25-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNAP25-AS1 Gene

Domains & Families for SNAP25-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNAP25-AS1 Gene

Function for SNAP25-AS1 Gene

Phenotypes From GWAS Catalog for SNAP25-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNAP25-AS1 Gene

Localization for SNAP25-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNAP25-AS1 Gene

Pathways & Interactions for SNAP25-AS1 Gene

SuperPathways for SNAP25-AS1 Gene

No Data Available

Interacting Proteins for SNAP25-AS1 Gene

Gene Ontology (GO) - Biological Process for SNAP25-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNAP25-AS1 Gene

Drugs & Compounds for SNAP25-AS1 Gene

No Compound Related Data Available

Transcripts for SNAP25-AS1 Gene

mRNA/cDNA for SNAP25-AS1 Gene

(4) Additional mRNA sequences :
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNAP25-AS1 Gene

SNAP25 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNAP25-AS1 Gene

No ASD Table

Relevant External Links for SNAP25-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNAP25-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNAP25-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SNAP25-AS1 Gene

This gene is overexpressed in Brain - Anterior cingulate cortex (BA24) (x4.9) and Brain - Frontal Cortex (BA9) (x4.5).

SOURCE GeneReport for Unigene cluster for SNAP25-AS1 Gene:

genes like me logo Genes that share expression patterns with SNAP25-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNAP25-AS1 Gene

Orthologs for SNAP25-AS1 Gene

Evolution for SNAP25-AS1 Gene

Gene Tree for SNAP25-AS1 (if available)
Gene Tree for SNAP25-AS1 (if available)

No data available for Orthologs for SNAP25-AS1 Gene

Paralogs for SNAP25-AS1 Gene

No data available for Paralogs for SNAP25-AS1 Gene

Variants for SNAP25-AS1 Gene

Sequence variations from dbSNP and Humsavar for SNAP25-AS1 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000016489 -- 10,150,976(-) G/A intron_variant
rs1000020204 -- 10,188,814(-) G/C intron_variant
rs1000024107 -- 10,190,016(-) C/G intron_variant
rs1000063240 -- 10,151,376(-) G/A intron_variant
rs1000091241 -- 10,085,135(-) T/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SNAP25-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv952985 CNV deletion 24416366
nsv833919 CNV gain 17160897
nsv833918 CNV loss 17160897
nsv585414 CNV loss 21841781
nsv526862 CNV gain 19592680
nsv524009 CNV loss 19592680
nsv522874 CNV loss 19592680
nsv478153 CNV novel sequence insertion 20440878
nsv3289 CNV deletion 18451855
nsv3288 CNV deletion 18451855
nsv180050 CNV deletion 16902084
nsv1144933 CNV deletion 24896259
nsv1063924 CNV gain 25217958
esv994554 CNV deletion 20482838
esv3893286 CNV loss 25118596
esv3645204 CNV loss 21293372
esv3645203 CNV gain 21293372
esv3645202 CNV loss 21293372
esv3584443 CNV loss 25503493
esv2722174 CNV deletion 23290073
esv2722172 CNV deletion 23290073
esv2674016 CNV deletion 23128226
esv1485898 CNV insertion 17803354
esv1236722 CNV deletion 17803354

Additional Variant Information for SNAP25-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNAP25-AS1 Gene

Disorders for SNAP25-AS1 Gene

Additional Disease Information for SNAP25-AS1

No disorders were found for SNAP25-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNAP25-AS1 Gene

Publications for SNAP25-AS1 Gene

  1. Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. (PMID: 23648065) Low SK … Nakamura Y (Cancer science 2013) 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for SNAP25-AS1 Gene

Sources for SNAP25-AS1 Gene

Loading form....