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Aliases for SNAI3-AS1 Gene
Subcategory (RNA class) for SNAI3-AS1 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for SNAI3-AS1 Gene
External Ids for SNAI3-AS1 Gene
- HGNC: 28327
- Entrez Gene: 197187
- Ensembl: ENSG00000260630
Previous GeneCards Identifiers for SNAI3-AS1 Gene
- GC16P088730
Summaries for SNAI3-AS1 Gene
GeneCards Summary for SNAI3-AS1 Gene
SNAI3-AS1 (SNAI3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for SNAI3-AS1 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SNAI3-AS1 Gene
Genomics for SNAI3-AS1 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for SNAI3-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around SNAI3-AS1 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for SNAI3-AS1 Gene
Genomic Locations for SNAI3-AS1 Gene
- chr16:88,663,298-88,687,278
- (GRCh38/hg38)
- Size:
- 23,981 bases
- Orientation:
- Plus strand
- chr16:88,729,706-88,753,594
- (GRCh37/hg19)
- Size:
- 23,889 bases
- Orientation:
- Plus strand
Genomic View for SNAI3-AS1 Gene
Genes around SNAI3-AS1 on UCSC Golden Path with GeneCards custom track
SNAI3-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 16q24.2 by HGNC
- 16q24.2 by Entrez Gene
- 16q24.2 by Ensembl
SNAI3-AS1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SNAI3-AS1 Gene
Proteins for SNAI3-AS1 Gene
Post-translational modifications for SNAI3-AS1 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNAI3-AS1
- Origene Custom Protein Services for SNAI3-AS1
No data available for DME Specific Peptides for SNAI3-AS1 Gene
Domains & Families for SNAI3-AS1 Gene
Gene Families for SNAI3-AS1 Gene
- HGNC:
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNAI3-AS1 Gene
Function for SNAI3-AS1 Gene
Phenotypes From GWAS Catalog for SNAI3-AS1 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
miRNA Products
Inhibitory RNA Products
- Origene shrna products in human, mouse, rat for SNAI3-AS1
- Browse OriGene Inhibitory RNA Products For SNAI3-AS1
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNAI3-AS1 Gene
Localization for SNAI3-AS1 Gene
| Compartment | Confidence |
|---|---|
| extracellular | 1 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNAI3-AS1 Gene
Transcripts for SNAI3-AS1 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNAI3-AS1 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000018F0E9_9606 | lncRNA | 829 | 4 |
Ensembl: ENST00000565633 (view in UCSC) , LncBook: HSALNT0235320, LNCipedia: SNAI3-AS1:2, NONCODE: NONHSAT144401.2, |
| URS000076C3B2_9606 | lncRNA | 2096 | 3 |
Ensembl: ENST00000568633 (view in UCSC) , LNCipedia: SNAI3-AS1:14, NONCODE: NONHSAT144410.2, |
| URS00004E3D17_9606 | lncRNA | 2048 | 2 |
Ensembl: ENST00000567997 (view in UCSC) , NONCODE: NONHSAT144411.2, |
| URS000075EA24_9606 | lncRNA | 923 | 2 |
HGNC: 28327, RefSeq: NR_024399, |
| URS00000220FE_9606 | lncRNA | 588 | 2 |
Ensembl: ENST00000569786 (view in UCSC) , LNCipedia: SNAI3-AS1:3, |
SNAI3-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for SNAI3-AS1 Gene
- 1 REFSEQ mRNAs :
- 6 NCBI additional mRNA sequence :
miRNA Products
Inhibitory RNA Products
- Origene shrna products in human, mouse, rat for SNAI3-AS1
- Browse OriGene Inhibitory RNA Products For SNAI3-AS1
Clone Products
Relevant External Links for SNAI3-AS1 Gene
- GeneLoc Exon Structure for
- SNAI3-AS1
Expression for SNAI3-AS1 Gene
mRNA differential expression in normal tissues according to GTEx for SNAI3-AS1 Gene
This gene is overexpressed in Brain - Cortex (x4.0).
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNAI3-AS1
SOURCE GeneReport for Unigene cluster for SNAI3-AS1 Gene:
Hs.499548Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNAI3-AS1 Gene
Orthologs for SNAI3-AS1 Gene
No data available for Orthologs for SNAI3-AS1 Gene
Paralogs for SNAI3-AS1 Gene
No data available for Paralogs for SNAI3-AS1 Gene
Variants for SNAI3-AS1 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv3064n100 | CNV | gain | 25217958 |
| esv1063243 | CNV | insertion | 17803354 |
| esv2622567 | CNV | insertion | 19546169 |
| esv3582435 | CNV | loss | 25503493 |
| esv993602 | CNV | insertion | 20482838 |
| nsv1065973 | CNV | loss | 25217958 |
| nsv471113 | CNV | loss | 18288195 |
| nsv482951 | CNV | loss | 15286789 |
| nsv819188 | CNV | gain | 19587683 |
| nsv819380 | CNV | gain | 19587683 |
| nsv833325 | CNV | loss | 17160897 |
| nsv833327 | CNV | loss | 17160897 |
| nsv952070 | CNV | deletion | 24416366 |
Additional Variant Information for SNAI3-AS1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SNAI3-AS1
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNAI3-AS1 Gene
Disorders for SNAI3-AS1 Gene
Additional Disease Information for SNAI3-AS1
No disorders were found for SNAI3-AS1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNAI3-AS1 Gene
Publications for SNAI3-AS1 Gene
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3
- VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. (PMID: 29507755) Yue Y … Liu J (Cell discovery 2018) 3
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
Products for SNAI3-AS1 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNAI3-AS1
- Origene Custom Protein Services for SNAI3-AS1
- Origene shrna products in human, mouse, rat for SNAI3-AS1
- Browse OriGene Inhibitory RNA Products For SNAI3-AS1
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for SNAI3-AS1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SNAI3-AS1
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- VectorBuilder Custom and pre-made DNA vectors for SNAI3-AS1 (ie. gene expression, shRNA knockdown, CRISPR)
- VectorBuilder Viral vectors for SNAI3-AS1 (ie. lentivirus, AAV, adenovirus)
- VectorBuilder CRISPR vectors for SNAI3-AS1 (ie. knockout, knockin, CRISPRa, CRISPRi)
- VectorBuilder Virus packaging for SNAI3-AS1 CRISPR vectors (ie. lentivirus, AAV, adenovirus)
- VectorBuilder Stable cell line generation for SNAI3-AS1
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SNAI3-AS1
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for SNAI3-AS1
- Search GeneCopoeia for miRNA 3'UTR Target clone products for SNAI3-AS1
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for SNAI3-AS1
Sources for SNAI3-AS1 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB