Aliases for SNAI3-AS1 Gene

Data sources for SNAI3-AS1 Gene:

Subcategory (RNA class) for SNAI3-AS1 Gene

lncRNA

Aliases for SNAI3-AS1 Gene

External Ids for SNAI3-AS1 Gene

Previous GeneCards Identifiers for SNAI3-AS1 Gene

  • GC16P088730

Summaries for SNAI3-AS1 Gene

GeneCards Summary for SNAI3-AS1 Gene

SNAI3-AS1 (SNAI3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SNAI3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SNAI3-AS1 Gene

Genomics for SNAI3-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNAI3-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNAI3-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SNAI3-AS1 Gene

Latest Assembly
chr16:88,663,297-88,687,278
(GRCh38/hg38)
Size:
23,982 bases
Orientation:
Plus strand

Previous Assembly
chr16:88,729,781-88,753,594
(GRCh37/hg19 by Entrez Gene)
Size:
23,814 bases
Orientation:
Plus strand

chr16:88,729,706-88,753,594
(GRCh37/hg19 by Ensembl)
Size:
23,889 bases
Orientation:
Plus strand

Genomic View for SNAI3-AS1 Gene

Genes around SNAI3-AS1 on UCSC Golden Path with GeneCards custom track
SNAI3-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SNAI3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNAI3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNAI3-AS1 Gene

Proteins for SNAI3-AS1 Gene

Post-translational modifications for SNAI3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNAI3-AS1 Gene

Domains & Families for SNAI3-AS1 Gene

Gene Families for SNAI3-AS1 Gene

genes like me logo Genes that share domains with SNAI3-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNAI3-AS1 Gene

Function for SNAI3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNAI3-AS1 Gene

Localization for SNAI3-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNAI3-AS1 gene
Compartment Confidence
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNAI3-AS1 Gene

Pathways & Interactions for SNAI3-AS1 Gene

PathCards logo

SuperPathways for SNAI3-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNAI3-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNAI3-AS1 Gene

Drugs & Compounds for SNAI3-AS1 Gene

No Compound Related Data Available

Transcripts for SNAI3-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNAI3-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000018F0E9_9606 lncRNA 829 4

Ensembl: ENST00000565633 (view in UCSC) ,

LncBook: HSALNT0235320,

LNCipedia: SNAI3-AS1:2,

NONCODE: NONHSAT144401.2,

URS000076C3B2_9606 lncRNA 2097 3

Ensembl: ENST00000568633 (view in UCSC) ,

LNCipedia: SNAI3-AS1:14,

NONCODE: NONHSAT144410.2,

URS00004E3D17_9606 lncRNA 2048 2

Ensembl: ENST00000567997 (view in UCSC) ,

NONCODE: NONHSAT144411.2,

URS00000220FE_9606 lncRNA 588 2

Ensembl: ENST00000569786 (view in UCSC) ,

LNCipedia: SNAI3-AS1:3,

URS0000EEF9B7_9606 lncRNA 2446 1

Ensembl: ENST00000669434 (view in UCSC) ,

SNAI3-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SNAI3-AS1 Gene

1 REFSEQ mRNAs :
6 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SNAI3-AS1 Gene

No ASD Table

Relevant External Links for SNAI3-AS1 Gene

GeneLoc Exon Structure for
SNAI3-AS1

Expression for SNAI3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNAI3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SNAI3-AS1 Gene

This gene is overexpressed in Brain - Cortex (x4.0).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNAI3-AS1

SOURCE GeneReport for Unigene cluster for SNAI3-AS1 Gene:

Hs.499548
genes like me logo Genes that share expression patterns with SNAI3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNAI3-AS1 Gene

Orthologs for SNAI3-AS1 Gene

Evolution for SNAI3-AS1 Gene

ENSEMBL:
Gene Tree for SNAI3-AS1 (if available)
TreeFam:
Gene Tree for SNAI3-AS1 (if available)

No data available for Orthologs for SNAI3-AS1 Gene

Paralogs for SNAI3-AS1 Gene

No data available for Paralogs for SNAI3-AS1 Gene

Variants for SNAI3-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SNAI3-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for SNAI3-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv3064n100 CNV gain 25217958
esv1063243 CNV insertion 17803354
esv2622567 CNV insertion 19546169
esv3582435 CNV loss 25503493
esv993602 CNV insertion 20482838
nsv1065973 CNV loss 25217958
nsv471113 CNV loss 18288195
nsv482951 CNV loss 15286789
nsv819188 CNV gain 19587683
nsv819380 CNV gain 19587683
nsv833325 CNV loss 17160897
nsv833327 CNV loss 17160897
nsv952070 CNV deletion 24416366

Additional Variant Information for SNAI3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNAI3-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNAI3-AS1 Gene

Disorders for SNAI3-AS1 Gene

Additional Disease Information for SNAI3-AS1

No disorders were found for SNAI3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNAI3-AS1 Gene

Publications for SNAI3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3
  2. Long non-coding RNA SNAI3-AS1 promotes the proliferation and metastasis of hepatocellular carcinoma by regulating the UPF1/Smad7 signalling pathway. (PMID: 31264769) Li Y … He S (Journal of cellular and molecular medicine 2019) 3
  3. VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. (PMID: 29507755) Yue Y … Liu J (Cell discovery 2018) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for SNAI3-AS1 Gene

Sources for SNAI3-AS1 Gene