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Aliases for SNAI3-AS1 Gene

Subcategory (RNA class) for SNAI3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SNAI3-AS1 Gene

  • SNAI3 Antisense RNA 1 2 3 5

External Ids for SNAI3-AS1 Gene

Previous GeneCards Identifiers for SNAI3-AS1 Gene

  • GC16P088730

Summaries for SNAI3-AS1 Gene

GeneCards Summary for SNAI3-AS1 Gene

SNAI3-AS1 (SNAI3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SNAI3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNAI3-AS1 Gene

Genomics for SNAI3-AS1 Gene

GeneHancer (GH) Regulatory Elements for SNAI3-AS1 Gene

Promoters and enhancers for SNAI3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I088661 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 566.3 -0.2 -192 2.6 HDGF PKNOX1 ARID4B SIN3A FEZF1 DMAP1 ZBTB7B YY1 POLR2B E2F8 SNAI3-AS1 MVD ZNF778 ZC3H18 ANKRD11 ENSG00000259877 CTU2 KLHDC4 BANP LINC00304
GH16I088665 Enhancer 0.6 ENCODE 550.8 +2.0 2000 0.2 FOXA2 RXRA MAX RAD21 FOXA1 GABPA YY1 HNF4A ZBTB17 SNAI3-AS1 MVD SNAI3
GH16I088649 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 14.5 -11.7 -11701 4.7 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 IRF4 CYBA SNAI3-AS1 ACSF3 RPL13 SNORD68 ENSG00000268218 BANP ENSG00000260121 ANKRD11 LOC101927863
GH16I088698 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.4 +39.5 39533 9.4 HDGF PKNOX1 SMAD1 MLX ARNT ARID4B SIN3A DMAP1 YY1 CBX5 RNF166 CTU2 SNAI3-AS1 SNAI3 ENSG00000260121 PIEZO1 CDK10 ZC3H18 APRT CYBA
GH16I088685 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 13.5 +23.7 23657 3.6 HDGF PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 CBX5 FOS KLF13 PIR40856 SNAI3 SNORD68 ACSF3 RPL13 ANKRD11 BANP SNAI3-AS1 RNF166 MVD
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNAI3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNAI3-AS1 Gene

Genomic Locations for SNAI3-AS1 Gene
23,889 bases
Plus strand

Genomic View for SNAI3-AS1 Gene

Genes around SNAI3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNAI3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNAI3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNAI3-AS1 Gene

Proteins for SNAI3-AS1 Gene

Post-translational modifications for SNAI3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNAI3-AS1 Gene

Domains & Families for SNAI3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNAI3-AS1 Gene

Function for SNAI3-AS1 Gene

Phenotypes From GWAS Catalog for SNAI3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNAI3-AS1 Gene

Localization for SNAI3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNAI3-AS1 Gene

Pathways & Interactions for SNAI3-AS1 Gene

SuperPathways for SNAI3-AS1 Gene

No Data Available

Interacting Proteins for SNAI3-AS1 Gene

Gene Ontology (GO) - Biological Process for SNAI3-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNAI3-AS1 Gene

Drugs & Compounds for SNAI3-AS1 Gene

No Compound Related Data Available

Transcripts for SNAI3-AS1 Gene

Unigene Clusters for SNAI3-AS1 Gene

SNAI3 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNAI3-AS1 Gene

No ASD Table

Relevant External Links for SNAI3-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNAI3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNAI3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SNAI3-AS1 Gene

This gene is overexpressed in Brain - Cortex (x4.0).

SOURCE GeneReport for Unigene cluster for SNAI3-AS1 Gene:

genes like me logo Genes that share expression patterns with SNAI3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNAI3-AS1 Gene

Orthologs for SNAI3-AS1 Gene

Evolution for SNAI3-AS1 Gene

Gene Tree for SNAI3-AS1 (if available)
Gene Tree for SNAI3-AS1 (if available)

No data available for Orthologs for SNAI3-AS1 Gene

Paralogs for SNAI3-AS1 Gene

No data available for Paralogs for SNAI3-AS1 Gene

Variants for SNAI3-AS1 Gene

Sequence variations from dbSNP and Humsavar for SNAI3-AS1 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000147127 -- 88,672,916(+) C/T intron_variant
rs1000170032 -- 88,686,842(+) A/C genic_downstream_transcript_variant, non_coding_transcript_variant
rs1000216828 -- 88,683,765(+) C/T genic_downstream_transcript_variant, intron_variant
rs1000275398 -- 88,675,192(+) A/C intron_variant, non_coding_transcript_variant
rs1000306676 -- 88,679,066(+) A/T genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SNAI3-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv3064n100 CNV gain 25217958
esv1063243 CNV insertion 17803354
esv2622567 CNV insertion 19546169
esv3582435 CNV loss 25503493
esv993602 CNV insertion 20482838
nsv1065973 CNV loss 25217958
nsv471113 CNV loss 18288195
nsv482951 CNV loss 15286789
nsv819188 CNV gain 19587683
nsv819380 CNV gain 19587683
nsv833325 CNV loss 17160897
nsv833327 CNV loss 17160897
nsv952070 CNV deletion 24416366

Additional Variant Information for SNAI3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNAI3-AS1 Gene

Disorders for SNAI3-AS1 Gene

Additional Disease Information for SNAI3-AS1

No disorders were found for SNAI3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNAI3-AS1 Gene

Publications for SNAI3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for SNAI3-AS1 Gene

Sources for SNAI3-AS1 Gene

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