Aliases for SMYD3-IT1 Gene

Subcategory (RNA class) for SMYD3-IT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for SMYD3-IT1 Gene

  • SMYD3 Intronic Transcript 1 2 3 5
  • SMYD3 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • SMYD3-IT1 2 168
  • HSALNG0012180 167
  • NONHSAG004890 92

External Ids for SMYD3-IT1 Gene

Previous GeneCards Identifiers for SMYD3-IT1 Gene

  • GC00U933563
  • GC01M246485

Summaries for SMYD3-IT1 Gene

GeneCards Summary for SMYD3-IT1 Gene

SMYD3-IT1 (SMYD3 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SMYD3-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SMYD3-IT1 Gene

Genomics for SMYD3-IT1 Gene

GeneHancer (GH) Regulatory Elements for SMYD3-IT1 Gene

Promoters and enhancers for SMYD3-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J246323 Enhancer 0.2 Ensembl 500.7 -1.3 -1262 0.2 SMYD3-IT1 RF00994-111 SMYD3
GH01J246324 Enhancer 0.2 Ensembl 500.7 -1.9 -1862 0.2 SMYD3-IT1 RF00994-111 SMYD3
GH01J246305 Enhancer 1.5 VISTA FANTOM5 Ensembl 0.4 +15.4 15440 2.1 ZBTB11 AFF1 HES1 NR3C1 TOE1 MYC TAF9B HDAC3 NCOR1 NFRKB HSALNG0012178 SMYD3-IT1 SMYD3
GH01J246317 Enhancer 0.4 Ensembl 0.7 +4.5 4538 1.4 FOS JUND MITF BHLHE40 STAT3 SMYD3-IT1 HSALNG0012178 SMYD3
GH01J246319 Enhancer 0.4 Ensembl 0.7 +2.3 2338 2.2 NR2F2 CEBPB MAFK SMYD3-IT1 HSALNG0012178 SMYD3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SMYD3-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SMYD3-IT1 Gene

Genomic Locations for SMYD3-IT1 Gene
chr1:246,321,663-246,322,439
(GRCh38/hg38)
Size:
777 bases
Orientation:
Minus strand
chr1:246,484,965-246,485,740
(GRCh37/hg19)
Size:
776 bases
Orientation:
Minus strand

Genomic View for SMYD3-IT1 Gene

Genes around SMYD3-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMYD3-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMYD3-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SMYD3-IT1 Gene

Proteins for SMYD3-IT1 Gene

Post-translational modifications for SMYD3-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMYD3-IT1 Gene

Domains & Families for SMYD3-IT1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SMYD3-IT1 Gene

Function for SMYD3-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMYD3-IT1 Gene

Localization for SMYD3-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMYD3-IT1 Gene

Pathways & Interactions for SMYD3-IT1 Gene

PathCards logo

SuperPathways for SMYD3-IT1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SMYD3-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SMYD3-IT1 Gene

Drugs & Compounds for SMYD3-IT1 Gene

No Compound Related Data Available

Transcripts for SMYD3-IT1 Gene

mRNA/cDNA for SMYD3-IT1 Gene

2 RNACentral transcripts :
6 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :
1 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SMYD3-IT1 Gene

No ASD Table

Relevant External Links for SMYD3-IT1 Gene

GeneLoc Exon Structure for
SMYD3-IT1

Expression for SMYD3-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SMYD3-IT1 Gene

genes like me logo Genes that share expression patterns with SMYD3-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMYD3-IT1 Gene

Orthologs for SMYD3-IT1 Gene

Evolution for SMYD3-IT1 Gene

ENSEMBL:
Gene Tree for SMYD3-IT1 (if available)
TreeFam:
Gene Tree for SMYD3-IT1 (if available)

No data available for Orthologs for SMYD3-IT1 Gene

Paralogs for SMYD3-IT1 Gene

No data available for Paralogs for SMYD3-IT1 Gene

Variants for SMYD3-IT1 Gene

Additional Variant Information for SMYD3-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMYD3-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SMYD3-IT1 Gene

Disorders for SMYD3-IT1 Gene

No disorders were found for SMYD3-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SMYD3-IT1 Gene

Publications for SMYD3-IT1 Gene

  1. [IMAGE: molecular integration of the analysis of the human genome and its expression]. (PMID: 7757816) Auffray C … Lamy B (Comptes rendus de l'Academie des sciences. Serie III, Sciences de la vie 1995) 3 54
  2. Gene-based sequence-tagged-sites (STSs) as the basis for a human gene map. (PMID: 7670491) Berry R … Sikela JM (Nature genetics 1995) 3 54

Products for SMYD3-IT1 Gene

Sources for SMYD3-IT1 Gene