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Aliases for SMYD3-IT1 Gene

Subcategory (RNA class) for SMYD3-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SMYD3-IT1 Gene

  • SMYD3 Intronic Transcript 1 2 3 5
  • SMYD3 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for SMYD3-IT1 Gene

Previous GeneCards Identifiers for SMYD3-IT1 Gene

  • GC00U933563
  • GC01M246485

Summaries for SMYD3-IT1 Gene

GeneCards Summary for SMYD3-IT1 Gene

SMYD3-IT1 (SMYD3 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SMYD3-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMYD3-IT1 Gene

Genomics for SMYD3-IT1 Gene

GeneHancer (GH) Regulatory Elements for SMYD3-IT1 Gene

Promoters and enhancers for SMYD3-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I246305 Enhancer 1.4 VISTA FANTOM5 0.4 +15.4 15439 2.1 PKNOX1 ATF1 ARNT ZNF766 ATF7 NCOA1 ZNF592 ATF4 GMEB1 SMARCA4 SMYD3-IT1 GC01M246190 RNU6-1283P SMYD3
GH01I246354 Enhancer 0.8 Ensembl ENCODE 0.3 -34.1 -34131 3.2 CTCF SRF RFX1 NFIB JUN MZF1 ZNF398 NR2F2 ZNF507 ZFHX2 SMYD3-IT1 ENSG00000207326 GC01M246427 SMYD3
GH01I246417 Promoter/Enhancer 1 EPDnew ENCODE 0.2 -95.1 -95057 0.2 ZNF280A JUND CBX5 SETDB1 SMYD3 ENSG00000207326 GC01M246427 SMYD3-IT1
GH01I246267 Enhancer 0.7 ENCODE 0.2 +54.2 54165 1.4 PYGO2 ZNF644 RELA GATA3 ZNF639 RFX1 CAVIN1 ZNF740 E2F5 NR4A1 SMYD3-IT1 GC01M246190 RNU6-1283P SMYD3
GH01I246213 Enhancer 1.2 Ensembl ENCODE 0.1 +107.7 107732 2.6 PKNOX1 SMAD1 ATF1 ARNT IRF4 YY1 NCOA2 TCF12 ZNF766 GATA2 ZNF670-ZNF695 ZNF669 RNU6-1283P AHCTF1 GC01M246190 SMYD3-IT1 SMYD3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SMYD3-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SMYD3-IT1 Gene

Genomic Locations for SMYD3-IT1 Gene
chr1:246,321,663-246,322,438
(GRCh38/hg38)
Size:
776 bases
Orientation:
Minus strand
chr1:246,484,965-246,485,740
(GRCh37/hg19)

Genomic View for SMYD3-IT1 Gene

Genes around SMYD3-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMYD3-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMYD3-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SMYD3-IT1 Gene

Proteins for SMYD3-IT1 Gene

Post-translational modifications for SMYD3-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMYD3-IT1 Gene

Domains & Families for SMYD3-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMYD3-IT1 Gene

Function for SMYD3-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMYD3-IT1 Gene

Localization for SMYD3-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMYD3-IT1 Gene

Pathways & Interactions for SMYD3-IT1 Gene

SuperPathways for SMYD3-IT1 Gene

No Data Available

Interacting Proteins for SMYD3-IT1 Gene

Gene Ontology (GO) - Biological Process for SMYD3-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMYD3-IT1 Gene

Drugs & Compounds for SMYD3-IT1 Gene

No Compound Related Data Available

Transcripts for SMYD3-IT1 Gene

mRNA/cDNA for SMYD3-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SMYD3-IT1 Gene

No ASD Table

Relevant External Links for SMYD3-IT1 Gene

GeneLoc Exon Structure for
SMYD3-IT1
ECgene alternative splicing isoforms for
SMYD3-IT1

Expression for SMYD3-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SMYD3-IT1 Gene

genes like me logo Genes that share expression patterns with SMYD3-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMYD3-IT1 Gene

Orthologs for SMYD3-IT1 Gene

Evolution for SMYD3-IT1 Gene

ENSEMBL:
Gene Tree for SMYD3-IT1 (if available)
TreeFam:
Gene Tree for SMYD3-IT1 (if available)

No data available for Orthologs for SMYD3-IT1 Gene

Paralogs for SMYD3-IT1 Gene

No data available for Paralogs for SMYD3-IT1 Gene

Variants for SMYD3-IT1 Gene

Additional Variant Information for SMYD3-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMYD3-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SMYD3-IT1 Gene

Disorders for SMYD3-IT1 Gene

No disorders were found for SMYD3-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SMYD3-IT1 Gene

Publications for SMYD3-IT1 Gene

  1. [IMAGE: molecular integration of the analysis of the human genome and its expression]. (PMID: 7757816) Auffray C … Lamy B (Comptes rendus de l'Academie des sciences. Serie III, Sciences de la vie 1995) 3 58
  2. Gene-based sequence-tagged-sites (STSs) as the basis for a human gene map. (PMID: 7670491) Berry R … Sikela JM (Nature genetics 1995) 3 58

Products for SMYD3-IT1 Gene

Sources for SMYD3-IT1 Gene

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