Aliases for SMPD4BP Gene

Aliases for SMPD4BP Gene

  • Sphingomyelin Phosphodiesterase 4B, Pseudogene 2 3 5
  • Sphingomyelin Phosphodiesterase 4, Neutral Membrane (Neutral Sphingomyelinase-3) Pseudogene 3
  • Neutral Sphingomyelinase-3 Pseudogene 3
  • SMPD4BP 5

External Ids for SMPD4BP Gene

Previous GeneCards Identifiers for SMPD4BP Gene

  • GC02P132738
  • GC02P133041
  • GC02P133376

Summaries for SMPD4BP Gene

GeneCards Summary for SMPD4BP Gene

SMPD4BP (Sphingomyelin Phosphodiesterase 4B, Pseudogene) is a Pseudogene.

Additional gene information for SMPD4BP Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SMPD4BP Gene

Genomics for SMPD4BP Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SMPD4BP Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SMPD4BP on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SMPD4BP Gene

Latest Assembly
chr2:131,492,813-131,521,576
(GRCh38/hg38)
Size:
28,764 bases
Orientation:
Plus strand

Previous Assembly
chr2:132,250,386-132,279,149
(GRCh37/hg19 by Entrez Gene)
Size:
28,764 bases
Orientation:
Plus strand

chr2:132,250,386-132,279,146
(GRCh37/hg19 by Ensembl)
Size:
28,761 bases
Orientation:
Plus strand

Genomic View for SMPD4BP Gene

Genes around SMPD4BP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMPD4BP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMPD4BP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMPD4BP Gene

Proteins for SMPD4BP Gene

Post-translational modifications for SMPD4BP Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMPD4BP Gene

Domains & Families for SMPD4BP Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SMPD4BP Gene

Function for SMPD4BP Gene

Phenotypes From GWAS Catalog for SMPD4BP Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMPD4BP Gene

Localization for SMPD4BP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMPD4BP Gene

Pathways & Interactions for SMPD4BP Gene

PathCards logo

SuperPathways for SMPD4BP Gene

No Data Available

Gene Ontology (GO) - Biological Process for SMPD4BP Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SMPD4BP Gene

Drugs & Compounds for SMPD4BP Gene

No Compound Related Data Available

Transcripts for SMPD4BP Gene

mRNA/cDNA for SMPD4BP Gene

12 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMPD4BP Gene

No ASD Table

Relevant External Links for SMPD4BP Gene

GeneLoc Exon Structure for
SMPD4BP

Expression for SMPD4BP Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SMPD4BP

SOURCE GeneReport for Unigene cluster for SMPD4BP Gene:

Hs.535622
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMPD4BP Gene

Orthologs for SMPD4BP Gene

Evolution for SMPD4BP Gene

ENSEMBL:
Gene Tree for SMPD4BP (if available)
TreeFam:
Gene Tree for SMPD4BP (if available)
Alliance of Genome Resources:
Additional Orthologs for SMPD4BP

No data available for Orthologs for SMPD4BP Gene

Paralogs for SMPD4BP Gene

No data available for Paralogs for SMPD4BP Gene

Variants for SMPD4BP Gene

Structural Variations from Database of Genomic Variants (DGV) for SMPD4BP Gene

Variant ID Type Subtype PubMed ID
dgv4075n100 CNV gain 25217958
dgv4077n100 CNV gain 25217958
dgv4079n100 CNV loss 25217958
dgv4080n100 CNV gain 25217958
dgv476n27 CNV loss 19166990
esv2662689 CNV deletion 23128226
esv2670824 CNV deletion 23128226
esv2759092 CNV gain+loss 17122850
esv2760576 CNV gain+loss 21179565
esv34412 CNV gain 17911159
esv34704 CNV gain 17911159
esv3575300 CNV gain 25503493
esv3584079 CNV loss 25503493
esv3592483 CNV loss 21293372
esv3592484 CNV gain 21293372
esv3592485 CNV gain 21293372
esv3893359 CNV gain+loss 25118596
nsv1002963 CNV gain 25217958
nsv1006738 CNV gain 25217958
nsv1008539 CNV gain 25217958
nsv1014682 CNV loss 25217958
nsv10185 CNV gain+loss 18304495
nsv2926 CNV insertion 18451855
nsv428404 CNV loss 18775914
nsv459396 CNV gain 19166990
nsv470486 CNV loss 18288195
nsv524021 CNV loss 19592680
nsv583140 CNV gain 21841781
nsv583143 CNV gain+loss 21841781
nsv7327 OTHER inversion 18451855
nsv834376 CNV gain 17160897
nsv979124 CNV duplication 23825009
nsv997248 CNV loss 25217958

Additional Variant Information for SMPD4BP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMPD4BP
Leiden Open Variation Database (LOVD)
SMPD4BP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance and Variation tolerance for SMPD4BP Gene

Disorders for SMPD4BP Gene

No disorders were found for SMPD4BP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SMPD4BP Gene

Publications for SMPD4BP Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for SMPD4BP Gene

Products for SMPD4BP Gene

Sources for SMPD4BP Gene