Aliases for SMIM39 Gene

Aliases for SMIM39 Gene

  • Small Integral Membrane Protein 39 2 3 4 5
  • SMIM39 5

External Ids for SMIM39 Gene

Previous GeneCards Identifiers for SMIM39 Gene

  • GC02P131866
  • GC02P131946
  • GC02P132450
  • GC02P132737
  • GC02P131806
  • GC02P133039
  • GC02P133375

Summaries for SMIM39 Gene

GeneCards Summary for SMIM39 Gene

SMIM39 (Small Integral Membrane Protein 39) is a Protein Coding gene.

Additional gene information for SMIM39 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SMIM39 Gene

Genomics for SMIM39 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SMIM39 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J131034 Promoter/Enhancer 1.2 Ensembl CraniofacialAtlas dbSUPER 250.7 +0.1 109 1.6 ZIC2 ZNF217 ZFX ZBTB8A RFX1 USF1 CEBPB ZBTB26 HSALNG0018855 HSALNG0018856 SMIM39 HSALNG0018857 FAM168B ARHGEF4
GH02J131036 Enhancer 0.4 FANTOM5 dbSUPER 250.7 +1.2 1160 0.2 HSALNG0018856 SMIM39 TUBA3D ARHGEF4 AMER3 HSALNG0018857 FAM168B
GH02J131092 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.2 +58.4 58375 3.7 ZNF207 MYC SSRP1 ZNF580 ZNF592 ZMYM3 POLR2A NFIC CHD4 YY1 FAM168B HSALNG0018859 lnc-PLEKHB2-7 ENSG00000227632 MN298114-118 SMIM39
GH02J131039 Promoter/Enhancer 0.8 Ensembl ENCODE dbSUPER 0.4 +6.0 5955 2.5 SPI1 CTCF HSALNG0018857 ARHGEF4 piR-51688 SMIM39 FAM168B
GH02J131037 Enhancer 0.4 Ensembl dbSUPER 0.7 +2.3 2309 0.4 ZIC2 ARHGEF4 HSALNG0018856 HSALNG0018857 SMIM39 FAM168B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SMIM39 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SMIM39 Gene

Latest Assembly
chr2:131,035,092-131,035,262
(GRCh38/hg38)
Size:
171 bases
Orientation:
Plus strand

Genomic View for SMIM39 Gene

Genes around SMIM39 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMIM39 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMIM39 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SMIM39 Gene

Proteins for SMIM39 Gene

  • Protein details for SMIM39 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A0A1B0GW54-SIM39_HUMAN
    Recommended name:
    Small integral membrane protein 39
    Protein Accession:
    A0A1B0GW54

    Protein attributes for SMIM39 Gene

    Size:
    56 amino acids
    Molecular mass:
    5955 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SMIM39 Gene

Post-translational modifications for SMIM39 Gene

No Post-translational modifications

Other Protein References for SMIM39 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for SMIM39 Gene

Domains & Families for SMIM39 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SMIM39 Gene

Function for SMIM39 Gene

Phenotypes From GWAS Catalog for SMIM39 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMIM39 Gene

Localization for SMIM39 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SMIM39 Gene

Membrane. Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for SMIM39 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SMIM39: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SMIM39 Gene

Pathways & Interactions for SMIM39 Gene

PathCards logo

SuperPathways for SMIM39 Gene

No Data Available

Interacting Proteins for SMIM39 Gene

Gene Ontology (GO) - Biological Process for SMIM39 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMIM39 Gene

Drugs & Compounds for SMIM39 Gene

No Compound Related Data Available

Transcripts for SMIM39 Gene

mRNA/cDNA for SMIM39 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMIM39 Gene

No ASD Table

Relevant External Links for SMIM39 Gene

GeneLoc Exon Structure for
SMIM39

Expression for SMIM39 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMIM39 Gene

Orthologs for SMIM39 Gene

Evolution for SMIM39 Gene

ENSEMBL:
Gene Tree for SMIM39 (if available)
TreeFam:
Gene Tree for SMIM39 (if available)
Alliance of Genome Resources:
Additional Orthologs for SMIM39

No data available for Orthologs for SMIM39 Gene

Paralogs for SMIM39 Gene

No data available for Paralogs for SMIM39 Gene

Variants for SMIM39 Gene

Additional Variant Information for SMIM39 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMIM39
Leiden Open Variation Database (LOVD)
SMIM39

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SMIM39 Gene

Disorders for SMIM39 Gene

No disorders were found for SMIM39 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SMIM39 Gene

Publications for SMIM39 Gene

  1. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier LW … Wilson RK (Nature 2005) 4

No data available for Mastermind for SMIM39 Gene

Products for SMIM39 Gene

Sources for SMIM39 Gene