Aliases for SMIM38 Gene

Aliases for SMIM38 Gene

  • Small Integral Membrane Protein 38 2 3 4 5
  • SMIM38 5

External Ids for SMIM38 Gene

Previous GeneCards Identifiers for SMIM38 Gene

  • GC11P069157
  • GC11P069160
  • GC11P069169

Summaries for SMIM38 Gene

GeneCards Summary for SMIM38 Gene

SMIM38 (Small Integral Membrane Protein 38) is a Protein Coding gene.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SMIM38 Gene

Genomics for SMIM38 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SMIM38 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SMIM38 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SMIM38 Gene

Latest Assembly
chr11:69,155,478-69,162,440
(GRCh38/hg38)
Size:
6,963 bases
Orientation:
Plus strand

Previous Assembly
chr11:68,923,403-68,929,908
(GRCh37/hg19 by Entrez Gene)
Size:
6,506 bases
Orientation:
Plus strand

Genomic View for SMIM38 Gene

Genes around SMIM38 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMIM38 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMIM38 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMIM38 Gene

Proteins for SMIM38 Gene

  • Protein details for SMIM38 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A0A286YFK9-SIM38_HUMAN
    Recommended name:
    Small integral membrane protein 38
    Protein Accession:
    A0A286YFK9

    Protein attributes for SMIM38 Gene

    Size:
    51 amino acids
    Molecular mass:
    5769 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SMIM38 Gene

Post-translational modifications for SMIM38 Gene

No Post-translational modifications

Other Protein References for SMIM38 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SMIM38 Gene

Domains & Families for SMIM38 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SMIM38 Gene

Function for SMIM38 Gene

Phenotypes From GWAS Catalog for SMIM38 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMIM38 Gene

Localization for SMIM38 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SMIM38 Gene

Membrane. Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for SMIM38 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SMIM38: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SMIM38 Gene

Pathways & Interactions for SMIM38 Gene

PathCards logo

SuperPathways for SMIM38 Gene

No Data Available

Interacting Proteins for SMIM38 Gene

Gene Ontology (GO) - Biological Process for SMIM38 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMIM38 Gene

Drugs & Compounds for SMIM38 Gene

No Compound Related Data Available

Transcripts for SMIM38 Gene

mRNA/cDNA for SMIM38 Gene

1 REFSEQ mRNAs :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMIM38 Gene

No ASD Table

Relevant External Links for SMIM38 Gene

GeneLoc Exon Structure for
SMIM38

Expression for SMIM38 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMIM38 Gene

Orthologs for SMIM38 Gene

Evolution for SMIM38 Gene

ENSEMBL:
Gene Tree for SMIM38 (if available)
TreeFam:
Gene Tree for SMIM38 (if available)
Alliance of Genome Resources:
Additional Orthologs for SMIM38

No data available for Orthologs for SMIM38 Gene

Paralogs for SMIM38 Gene

No data available for Paralogs for SMIM38 Gene

Variants for SMIM38 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SMIM38 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for SMIM38 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMIM38
Leiden Open Variation Database (LOVD)
SMIM38

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SMIM38 Gene

Disorders for SMIM38 Gene

Additional Disease Information for SMIM38

Open Targets Platform
Open Targets Platform

No disorders were found for SMIM38 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMIM38 Gene

Publications for SMIM38 Gene

  1. Discovery of high-confidence human protein-coding genes and exons by whole-genome PhyloCSF helps elucidate 118 GWAS loci. (PMID: 31537640) Mudge JM … Kellis M (Genome research 2019) 2 3
  2. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor TD … Sakaki Y (Nature 2006) 3 4

No data available for Mastermind for SMIM38 Gene

Products for SMIM38 Gene

Sources for SMIM38 Gene