Aliases for SMIM32 Gene

Aliases for SMIM32 Gene

  • Small Integral Membrane Protein 32 2 3 4 5

External Ids for SMIM32 Gene

Summaries for SMIM32 Gene

GeneCards Summary for SMIM32 Gene

SMIM32 (Small Integral Membrane Protein 32) is a Protein Coding gene. Diseases associated with SMIM32 include Clear Cell Renal Cell Carcinoma.

Additional gene information for SMIM32 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SMIM32 Gene

Genomics for SMIM32 Gene

GeneHancer (GH) Regulatory Elements for SMIM32 Gene

Promoters and enhancers for SMIM32 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J136189 Promoter/Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas 521.4 +1.7 1690 4.8 ZIC2 ZBTB26 MYC ZNF341 EZH2 MIER1 KMT2B BCL11A SP2 ZBTB17 SMIM32 TRPC7-AS1 lnc-SMIM32-4
GH05J136131 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 20.3 +59.5 59540 3.3 HNRNPK ZBTB40 EP300 NRF1 TCF12 MYC POLR2G GTF2E2 PHF8 ZFX SMAD5 ENSG00000277524 ENSG00000274934 ENSG00000275646 SMAD5-AS1 lnc-TGFBI-2 SMIM32
GH05J136122 Enhancer 1.1 Ensembl ENCODE 18.9 +69.4 69362 2 ZSCAN5C TCF12 ZNF639 ZNF10 FOXA1 TRIM28 ATF2 TBX3 ZNF341 FOXA2 SMIM32 ENSG00000254239 IL9 LECT2 lnc-SMAD5-5 VTRNA2-1
GH05J136202 Enhancer 0.9 Ensembl ENCODE CraniofacialAtlas 20 -9.9 -9894 1.1 RXRA YY1 NANOG TCF12 SIN3A EP300 DACH1 SP1 EGR1 CTBP2 SMIM32 lnc-SMIM32-4 piR-32956 TRPC7-AS1
GH05J136195 Enhancer 0.7 Ensembl ENCODE CraniofacialAtlas 20.8 -3.1 -3141 1 ZFHX2 NR2F6 FOXA1 SMIM32 TRPC7-AS1 lnc-SMIM32-4 piR-32956
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SMIM32 on UCSC Golden Path with GeneCards custom track

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for SMIM32

Genomic Locations for SMIM32 Gene

Genomic Locations for SMIM32 Gene
chr5:136,191,468-136,193,163
(GRCh38/hg38)
Size:
1,696 bases
Orientation:
Minus strand
chr5:135,527,156-135,528,851
(GRCh37/hg19)
Size:
1,696 bases
Orientation:
Minus strand

Genomic View for SMIM32 Gene

Genes around SMIM32 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMIM32 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMIM32 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMIM32 Gene

Proteins for SMIM32 Gene

  • Protein details for SMIM32 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A0A1B0GUA5-SIM32_HUMAN
    Recommended name:
    Small integral membrane protein 32
    Protein Accession:
    A0A1B0GUA5

    Protein attributes for SMIM32 Gene

    Size:
    103 amino acids
    Molecular mass:
    10859 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SMIM32 Gene

Post-translational modifications for SMIM32 Gene

No Post-translational modifications

Other Protein References for SMIM32 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SMIM32 Gene

Domains & Families for SMIM32 Gene

Gene Families for SMIM32 Gene

Human Protein Atlas (HPA):
  • Predicted membrane proteins

Protein Domains for SMIM32 Gene

ProtoNet:
genes like me logo Genes that share domains with SMIM32: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SMIM32 Gene

Function for SMIM32 Gene

Phenotypes From GWAS Catalog for SMIM32 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMIM32 Gene

Localization for SMIM32 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SMIM32 Gene

Membrane; Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for SMIM32 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SMIM32: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SMIM32 Gene

Pathways & Interactions for SMIM32 Gene

PathCards logo

SuperPathways for SMIM32 Gene

No Data Available

Interacting Proteins for SMIM32 Gene

;

Gene Ontology (GO) - Biological Process for SMIM32 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMIM32 Gene

Drugs & Compounds for SMIM32 Gene

No Compound Related Data Available

Transcripts for SMIM32 Gene

mRNA/cDNA for SMIM32 Gene

1 REFSEQ mRNAs :
6 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMIM32 Gene

No ASD Table

Relevant External Links for SMIM32 Gene

GeneLoc Exon Structure for
SMIM32

Expression for SMIM32 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SMIM32

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMIM32 Gene

Orthologs for SMIM32 Gene

Evolution for SMIM32 Gene

ENSEMBL:
Gene Tree for SMIM32 (if available)
TreeFam:
Gene Tree for SMIM32 (if available)

No data available for Orthologs for SMIM32 Gene

Paralogs for SMIM32 Gene

No data available for Paralogs for SMIM32 Gene

Variants for SMIM32 Gene

Additional dbSNP identifiers (rs#s) for SMIM32 Gene

Structural Variations from Database of Genomic Variants (DGV) for SMIM32 Gene

Variant ID Type Subtype PubMed ID
nsv508381 CNV deletion 20534489

Additional Variant Information for SMIM32 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMIM32

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SMIM32 Gene

Disorders for SMIM32 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SMIM32 Gene - From: LncRNADisease and GeneCards

Disorder Aliases PubMed IDs
clear cell renal cell carcinoma
  • clear cell carcinoma of kidney
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SMIM32

genes like me logo Genes that share disorders with SMIM32: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SMIM32 Gene

Publications for SMIM32 Gene

  1. Downregulation of a novel long non-coding RNA, LOC389332, is associated with poor prognosis and tumor progression in clear cell renal cell carcinoma. (PMID: 28450954) Jin P … Liu Y (Experimental and therapeutic medicine 2017) 3 54
  2. Integrated genomic analysis implicates haploinsufficiency of multiple chromosome 5q31.2 genes in de novo myelodysplastic syndromes pathogenesis. (PMID: 19240791) Graubert TA … Walter MJ (PloS one 2009) 3 54
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 54
  4. The DNA sequence and comparative analysis of human chromosome 5. (PMID: 15372022) Schmutz J … Rubin EM (Nature 2004) 4 54
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

No data available for Mastermind for SMIM32 Gene

Products for SMIM32 Gene

Sources for SMIM32 Gene