Aliases for SMIM31 Gene

Aliases for SMIM31 Gene

  • Small Integral Membrane Protein 31 2 3 4 5
  • Long Intergenic Non-Protein Coding RNA 1207 2 3
  • LINC01207 3
  • SMIM31 5

External Ids for SMIM31 Gene

Previous HGNC Symbols for SMIM31 Gene

  • LINC01207

Summaries for SMIM31 Gene

GeneCards Summary for SMIM31 Gene

SMIM31 (Small Integral Membrane Protein 31) is a Protein Coding gene. Diseases associated with SMIM31 include Lung Cancer Susceptibility 3 and Gastric Cancer.

Additional gene information for SMIM31 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SMIM31 Gene

Genomics for SMIM31 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SMIM31 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J164753 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE 621.7 0.0 -7 1.8 CREB1 FOXA1 GATA3 SMIM31 lnc-APELA-2 piR-61053-010 MARCHF1
GH04J164760 Enhancer 0.5 ENCODE 21.8 +7.1 7107 2.2 ZBTB11 ZC3H11A ZFP64 ZNF781 ZNF518A ZNF697 PRDM12 SMIM31 FAM218A RNU6-668P lnc-APELA-2 RF00026-836 APELA
GH04J164734 Enhancer 0.4 Ensembl 17.1 -19.2 -19163 0.2 GABPA ELF1 SPI1 SMIM31 CHORDC1P3 piR-36575-053 lnc-SMIM31-7 MARCHF1
GH04J164706 Enhancer 0.4 Ensembl 12.6 -47.2 -47163 0.6 TEAD4 USF1 BHLHE40 USF2 SMIM31 RNU6-668P HSALNG0038310 CHORDC1P3 lnc-SMIM31-7 MARCHF1
GH04J164647 Enhancer 0.4 Ensembl ENCODE 9.8 -105.7 -105650 1.3 JUND piR-48799-103 SMIM31 piR-60885-104 MARCHF1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SMIM31 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for SMIM31

Genomic Locations for SMIM31 Gene

Genomic Locations for SMIM31 Gene
chr4:164,754,064-164,803,795
(GRCh38/hg38)
Size:
49,732 bases
Orientation:
Plus strand
chr4:165,675,216-165,724,947
(GRCh37/hg19)
Size:
49,732 bases
Orientation:
Plus strand

Genomic View for SMIM31 Gene

Genes around SMIM31 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMIM31 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMIM31 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMIM31 Gene

Proteins for SMIM31 Gene

  • Protein details for SMIM31 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A0A1B0GVY4-SIM31_HUMAN
    Recommended name:
    Small integral membrane protein 31
    Protein Accession:
    A0A1B0GVY4

    Protein attributes for SMIM31 Gene

    Size:
    71 amino acids
    Molecular mass:
    8394 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SMIM31 Gene

Post-translational modifications for SMIM31 Gene

Other Protein References for SMIM31 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SMIM31 Gene

Domains & Families for SMIM31 Gene

Gene Families for SMIM31 Gene

Human Protein Atlas (HPA):
  • Predicted secreted proteins

Protein Domains for SMIM31 Gene

ProtoNet:
genes like me logo Genes that share domains with SMIM31: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SMIM31 Gene

Function for SMIM31 Gene

Phenotypes From GWAS Catalog for SMIM31 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMIM31 Gene

Localization for SMIM31 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SMIM31 Gene

Membrane. Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for SMIM31 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
GO:0030424 axon IEA --
genes like me logo Genes that share ontologies with SMIM31: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SMIM31 Gene

Pathways & Interactions for SMIM31 Gene

PathCards logo

SuperPathways for SMIM31 Gene

No Data Available

Interacting Proteins for SMIM31 Gene

Gene Ontology (GO) - Biological Process for SMIM31 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMIM31 Gene

Drugs & Compounds for SMIM31 Gene

No Compound Related Data Available

Transcripts for SMIM31 Gene

mRNA/cDNA for SMIM31 Gene

1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMIM31 Gene

No ASD Table

Relevant External Links for SMIM31 Gene

GeneLoc Exon Structure for
SMIM31

Expression for SMIM31 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SMIM31

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMIM31 Gene

Orthologs for SMIM31 Gene

Evolution for SMIM31 Gene

ENSEMBL:
Gene Tree for SMIM31 (if available)
TreeFam:
Gene Tree for SMIM31 (if available)

No data available for Orthologs for SMIM31 Gene

Paralogs for SMIM31 Gene

No data available for Paralogs for SMIM31 Gene

Variants for SMIM31 Gene

Additional dbSNP identifiers (rs#s) for SMIM31 Gene

Structural Variations from Database of Genomic Variants (DGV) for SMIM31 Gene

Variant ID Type Subtype PubMed ID
dgv178n6 CNV deletion 16902084
nsv1019150 CNV gain 25217958
nsv10604 CNV loss 18304495
nsv293502 CNV deletion 16902084
nsv461822 CNV gain 19166990
nsv596037 CNV gain 21841781
nsv596039 CNV gain 21841781
nsv596040 CNV loss 21841781
nsv830139 CNV gain 17160897

Additional Variant Information for SMIM31 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMIM31

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SMIM31 Gene

Disorders for SMIM31 Gene

MalaCards: The human disease database

(2) MalaCards diseases for SMIM31 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
lung cancer susceptibility 3
  • lncr3
gastric cancer
  • gastric cancer, somatic
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with SMIM31: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SMIM31 Gene

Publications for SMIM31 Gene

  1. Long non-coding RNA LINC01207 silencing suppresses AGR2 expression to facilitate autophagy and apoptosis of pancreatic cancer cells by sponging miR-143-5p. (PMID: 30991076) Liu C … Yang XH (Molecular and cellular endocrinology 2019) 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  3. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier LW … Wilson RK (Nature 2005) 4
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4

Products for SMIM31 Gene

Sources for SMIM31 Gene