Aliases for SMIM28 Gene

Aliases for SMIM28 Gene

  • Small Integral Membrane Protein 28 2 3 4 5
  • SMIM28 5

External Ids for SMIM28 Gene

Summaries for SMIM28 Gene

GeneCards Summary for SMIM28 Gene

SMIM28 (Small Integral Membrane Protein 28) is a Protein Coding gene.

Additional gene information for SMIM28 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SMIM28 Gene

Genomics for SMIM28 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SMIM28 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J138377 Enhancer 0.2 Ensembl 600.7 +0.7 696 1.6 SMIM28 HEBP2 PERP ENSG00000218499
GH06J138371 Enhancer 0.8 Ensembl 0.4 -5.5 -5504 2 ZNF512 JUND SP1 DPF2 SOX6 EP300 HMBOX1 ZNF10 NR2C2 NCOR1 HEBP2 PERP SMIM28 piR-41245-248 PBOV1
GH06J138393 Enhancer 0.7 Ensembl 0.4 +16.7 16696 1.6 RNF2 ATF7 ZNF24 SOX6 EP300 ZNF766 HMBOX1 CTBP1 HDAC2 E2F5 ENSG00000218499 HEBP2 SMIM28
GH06J138382 Enhancer 0.3 Ensembl 0.7 +4.8 4796 0.6 CTCF CEBPB HEBP2 PERP SMIM28 ENSG00000218499
GH06J138287 Enhancer 1 Ensembl ENCODE dbSUPER 0.2 -89.1 -89135 2.8 CTCF RAD21 TRIM22 CEBPB RNF2 SMC3 EP300 ZNF18 MBD1 ARID4B PERP RF00017-5807 lnc-SMIM28-1 PBOV1 SMIM28 ARFGEF3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SMIM28 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SMIM28 Gene

Genomic Locations for SMIM28 Gene
chr6:138,377,905-138,383,486
(GRCh38/hg38)
Size:
5,582 bases
Orientation:
Plus strand
chr6:138,699,042-138,704,212
(GRCh37/hg19)
Size:
5,171 bases
Orientation:
Plus strand

Genomic View for SMIM28 Gene

Genes around SMIM28 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMIM28 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMIM28 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMIM28 Gene

Proteins for SMIM28 Gene

  • Protein details for SMIM28 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A0A1B0GU29-SIM28_HUMAN
    Recommended name:
    Small integral membrane protein 28
    Protein Accession:
    A0A1B0GU29

    Protein attributes for SMIM28 Gene

    Size:
    152 amino acids
    Molecular mass:
    16551 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SMIM28 Gene

Post-translational modifications for SMIM28 Gene

No Post-translational modifications

Other Protein References for SMIM28 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SMIM28 Gene

Domains & Families for SMIM28 Gene

Gene Families for SMIM28 Gene

Human Protein Atlas (HPA):
  • Predicted membrane proteins

Protein Domains for SMIM28 Gene

ProtoNet:
genes like me logo Genes that share domains with SMIM28: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SMIM28 Gene

Function for SMIM28 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMIM28 Gene

Localization for SMIM28 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SMIM28 Gene

Membrane. Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for SMIM28 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SMIM28: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SMIM28 Gene

Pathways & Interactions for SMIM28 Gene

PathCards logo

SuperPathways for SMIM28 Gene

No Data Available

Interacting Proteins for SMIM28 Gene

Gene Ontology (GO) - Biological Process for SMIM28 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMIM28 Gene

Drugs & Compounds for SMIM28 Gene

No Compound Related Data Available

Transcripts for SMIM28 Gene

mRNA/cDNA for SMIM28 Gene

1 REFSEQ mRNAs :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMIM28 Gene

No ASD Table

Relevant External Links for SMIM28 Gene

GeneLoc Exon Structure for
SMIM28

Expression for SMIM28 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMIM28 Gene

Orthologs for SMIM28 Gene

Evolution for SMIM28 Gene

ENSEMBL:
Gene Tree for SMIM28 (if available)
TreeFam:
Gene Tree for SMIM28 (if available)

No data available for Orthologs for SMIM28 Gene

Paralogs for SMIM28 Gene

No data available for Paralogs for SMIM28 Gene

Variants for SMIM28 Gene

Additional dbSNP identifiers (rs#s) for SMIM28 Gene

Additional Variant Information for SMIM28 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMIM28

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SMIM28 Gene

Disorders for SMIM28 Gene

Additional Disease Information for SMIM28

No disorders were found for SMIM28 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMIM28 Gene

Publications for SMIM28 Gene

  1. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall AJ … Beck S (Nature 2003) 4

Products for SMIM28 Gene

Sources for SMIM28 Gene