Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SMIM2-IT1 Gene

Subcategory (RNA class) for SMIM2-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SMIM2-IT1 Gene

  • SMIM2 Intronic Transcript 1 2 3 5
  • C13orf44 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • SMIM2 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • C13orf44-IT1 3

External Ids for SMIM2-IT1 Gene

Previous HGNC Symbols for SMIM2-IT1 Gene

  • C13orf44-IT1

Previous GeneCards Identifiers for SMIM2-IT1 Gene

  • GC13M044724

Summaries for SMIM2-IT1 Gene

GeneCards Summary for SMIM2-IT1 Gene

SMIM2-IT1 (SMIM2 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SMIM2-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMIM2-IT1 Gene

Genomics for SMIM2-IT1 Gene

GeneHancer (GH) Regulatory Elements for SMIM2-IT1 Gene

Promoters and enhancers for SMIM2-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I044157 Enhancer 1.1 Ensembl ENCODE dbSUPER 550.8 -1.6 -1573 3.9 PKNOX1 NFIB JUN MAX NEUROD1 RAD21 BRCA1 RFX5 CTBP1 GATA3 SMIM2 SMIM2-IT1 SMIM2-AS1
GH13I044300 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.6 -149.3 -149262 14.8 FOXA2 ZSCAN4 SIN3A BATF IRF4 BRCA1 RAD21 RFX5 YY1 ZNF335 SERP2 LACC1 GPALPP1 SMIM2 SMIM2-IT1 SMIM2-AS1 CCDC122 TSC22D1 GC13M044319 GC13M044260
GH13I044191 Enhancer 1.3 Ensembl ENCODE dbSUPER 12 -33.7 -33684 1.7 FOXA2 ZNF529 ZSCAN4 NFRKB INSM2 KLF17 ZNF76 ZNF2 RAD21 YY1 GPALPP1 SMIM2 SMIM2-IT1 SMIM2-AS1 TSC22D1 ENSG00000276854
GH13I044218 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.6 -61.5 -61547 2.3 FOXA2 FEZF1 RAD21 YY1 SCRT2 ZSCAN5C KLF7 FOS RXRA OVOL3 SMIM2 SMIM2-IT1 SMIM2-AS1 GC13P044200 ENSG00000230731
GH13I044292 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 10.1 -135.2 -135191 2.7 JUN HLF CEBPB CEBPG FOSL1 MITF JUND HNF4A SERP2 SMIM2-IT1 SMIM2 LACC1 CCDC122 GC13M044260 GC13M044319
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SMIM2-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SMIM2-IT1 Gene

Genomic Locations for SMIM2-IT1 Gene
chr13:44,146,470-44,158,222
(GRCh38/hg38)
Size:
11,753 bases
Orientation:
Minus strand
chr13:44,720,606-44,732,358
(GRCh37/hg19)

Genomic View for SMIM2-IT1 Gene

Genes around SMIM2-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMIM2-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMIM2-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMIM2-IT1 Gene

Proteins for SMIM2-IT1 Gene

Post-translational modifications for SMIM2-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMIM2-IT1 Gene

Domains & Families for SMIM2-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMIM2-IT1 Gene

Function for SMIM2-IT1 Gene

Phenotypes From GWAS Catalog for SMIM2-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMIM2-IT1 Gene

Localization for SMIM2-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMIM2-IT1 Gene

Pathways & Interactions for SMIM2-IT1 Gene

SuperPathways for SMIM2-IT1 Gene

No Data Available

Interacting Proteins for SMIM2-IT1 Gene

Gene Ontology (GO) - Biological Process for SMIM2-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMIM2-IT1 Gene

Drugs & Compounds for SMIM2-IT1 Gene

No Compound Related Data Available

Transcripts for SMIM2-IT1 Gene

mRNA/cDNA for SMIM2-IT1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SMIM2-IT1 Gene

SMIM2 intronic transcript 1 (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SMIM2-IT1 Gene

No ASD Table

Relevant External Links for SMIM2-IT1 Gene

GeneLoc Exon Structure for
SMIM2-IT1
ECgene alternative splicing isoforms for
SMIM2-IT1

Expression for SMIM2-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SMIM2-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for SMIM2-IT1 Gene

This gene is overexpressed in Testis (x32.5) and Muscle - Skeletal (x6.6).

SOURCE GeneReport for Unigene cluster for SMIM2-IT1 Gene:

Hs.652552
genes like me logo Genes that share expression patterns with SMIM2-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMIM2-IT1 Gene

Orthologs for SMIM2-IT1 Gene

Evolution for SMIM2-IT1 Gene

ENSEMBL:
Gene Tree for SMIM2-IT1 (if available)
TreeFam:
Gene Tree for SMIM2-IT1 (if available)

No data available for Orthologs for SMIM2-IT1 Gene

Paralogs for SMIM2-IT1 Gene

No data available for Paralogs for SMIM2-IT1 Gene

Variants for SMIM2-IT1 Gene

Sequence variations from dbSNP and Humsavar for SMIM2-IT1 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000463019 -- 44,155,442(-) T/C intron_variant
rs1000797890 -- 44,150,470(-) C/A intron_variant
rs1000829921 -- 44,159,899(-) C/G upstream_transcript_variant
rs1001007641 -- 44,152,635(-) T/A intron_variant
rs1001350159 -- 44,157,266(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SMIM2-IT1 Gene

Variant ID Type Subtype PubMed ID
nsv1048346 CNV gain 25217958

Additional Variant Information for SMIM2-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMIM2-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SMIM2-IT1 Gene

Disorders for SMIM2-IT1 Gene

Additional Disease Information for SMIM2-IT1

No disorders were found for SMIM2-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMIM2-IT1 Gene

Publications for SMIM2-IT1 Gene

No publications were found for SMIM2-IT1 Gene.

Products for SMIM2-IT1 Gene

Sources for SMIM2-IT1 Gene

Content
Loading form....