Aliases for SMIM2-AS1 Gene

Subcategory (RNA class) for SMIM2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for SMIM2-AS1 Gene

  • SMIM2 Antisense RNA 1 2 3 5
  • C13orf44 Antisense RNA 1 (Non-Protein Coding) 2 3
  • SMIM2 Antisense RNA 1 (Non-Protein Coding) 2 3
  • SMIM2-AS1 2 168
  • HSALNG0096734 167
  • NONHSAG013375 92
  • C13orf44-AS1 3
  • C3orf81-AS1 3

External Ids for SMIM2-AS1 Gene

Previous HGNC Symbols for SMIM2-AS1 Gene

  • C13orf44-AS1

Previous GeneCards Identifiers for SMIM2-AS1 Gene

  • GC13P044719

Summaries for SMIM2-AS1 Gene

GeneCards Summary for SMIM2-AS1 Gene

SMIM2-AS1 (SMIM2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SMIM2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SMIM2-AS1 Gene

Genomics for SMIM2-AS1 Gene

GeneHancer (GH) Regulatory Elements for SMIM2-AS1 Gene

Promoters and enhancers for SMIM2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J044141 Promoter/Enhancer 1.9 Ensembl ENCODE CraniofacialAtlas dbSUPER 23 +32.0 32048 3.6 ZSCAN5C NRF1 POLR2G SP1 PHF8 ZFX ZNF639 ZNF10 ZIC2 POLR2A SMIM2-AS1 LINC00390 SMIM2
GH13J044155 Promoter/Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 13.7 +45.6 45635 1.3 USF1 TOE1 RAD51 ZNF585B ZBTB17 ZNF76 ZFHX2 ZNF610 ZNF189 KLF17 HQ292103 SMIM2-AS1 SMIM2-IT1 SMIM2
GH13J044264 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 14.7 +155.7 155653 6.2 POLR2A EP300 ZNF148 ZNF195 ZBTB17 FOS CEBPB CHD2 ZFHX2 ZNF621 lnc-SERP2-7 SMIM2-AS1 GPALPP1 LACC1 RN7SL49P NUFIP1 SERP2 CCDC122 lnc-SMIM2-3
GH13J044173 Enhancer 0.9 Ensembl ENCODE dbSUPER 20.6 +64.4 64372 2 ZNF316 MAFK NFE2 NFE2L1 BHLHE40 MAFG MITF NFE2L2 MAFF BACH1 SMIM2-AS1 SMIM2 ENSG00000276854
GH13J044103 Enhancer 1 Ensembl ENCODE 13.5 -3.1 -3089 7.7 EP300 ZNF217 TCF12 USF1 KDM6A RFX1 SKI CTBP1 FOXA2 RAD51 SMIM2-AS1 SMIM2 SMIM2-IT1 TSC22D1 piR-32214-146 LINC00390
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SMIM2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SMIM2-AS1 Gene

Genomic Locations for SMIM2-AS1 Gene
chr13:44,110,448-44,241,932
(GRCh38/hg38)
Size:
131,485 bases
Orientation:
Plus strand
chr13:44,716,682-44,813,010
(GRCh37/hg19)
Size:
96,329 bases
Orientation:
Plus strand

Genomic View for SMIM2-AS1 Gene

Genes around SMIM2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMIM2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMIM2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMIM2-AS1 Gene

Proteins for SMIM2-AS1 Gene

Post-translational modifications for SMIM2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMIM2-AS1 Gene

Domains & Families for SMIM2-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SMIM2-AS1 Gene

Function for SMIM2-AS1 Gene

Phenotypes From GWAS Catalog for SMIM2-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMIM2-AS1 Gene

Localization for SMIM2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMIM2-AS1 Gene

Pathways & Interactions for SMIM2-AS1 Gene

PathCards logo

SuperPathways for SMIM2-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SMIM2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SMIM2-AS1 Gene

Drugs & Compounds for SMIM2-AS1 Gene

No Compound Related Data Available

Transcripts for SMIM2-AS1 Gene

mRNA/cDNA for SMIM2-AS1 Gene

31 RNACentral transcripts :
2 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
7 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
12 NONCODE transcripts :
22 LncBook transcripts :
21 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SMIM2-AS1 Gene

No ASD Table

Relevant External Links for SMIM2-AS1 Gene

GeneLoc Exon Structure for
SMIM2-AS1

Expression for SMIM2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SMIM2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SMIM2-AS1 Gene

This gene is overexpressed in Testis (x7.1), Kidney - Cortex (x7.0), and Liver (x5.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SMIM2-AS1

genes like me logo Genes that share expression patterns with SMIM2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMIM2-AS1 Gene

Orthologs for SMIM2-AS1 Gene

Evolution for SMIM2-AS1 Gene

ENSEMBL:
Gene Tree for SMIM2-AS1 (if available)
TreeFam:
Gene Tree for SMIM2-AS1 (if available)

No data available for Orthologs for SMIM2-AS1 Gene

Paralogs for SMIM2-AS1 Gene

No data available for Paralogs for SMIM2-AS1 Gene

Variants for SMIM2-AS1 Gene

Additional dbSNP identifiers (rs#s) for SMIM2-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for SMIM2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv1426964 CNV deletion 17803354
esv2747329 CNV deletion 23290073
esv2747331 CNV deletion 23290073
esv3631931 CNV loss 21293372
esv988004 CNV deletion 20482838
nsv1048346 CNV gain 25217958

Additional Variant Information for SMIM2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMIM2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SMIM2-AS1 Gene

Disorders for SMIM2-AS1 Gene

Additional Disease Information for SMIM2-AS1

No disorders were found for SMIM2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMIM2-AS1 Gene

Publications for SMIM2-AS1 Gene

  1. Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits. (PMID: 24204828) Zheng JS … Lai CQ (PloS one 2013) 3 54
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54

Products for SMIM2-AS1 Gene

Sources for SMIM2-AS1 Gene