Aliases for SMIM10L2B-AS1 Gene

Subcategory (RNA class) for SMIM10L2B-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for SMIM10L2B-AS1 Gene

  • SMIM10L2B Antisense RNA 1 2 3 5
  • SMIM10L2B-AS1 2 168
  • NONHSAG055375 92
  • HSALNG0140277 167

External Ids for SMIM10L2B-AS1 Gene

Summaries for SMIM10L2B-AS1 Gene

GeneCards Summary for SMIM10L2B-AS1 Gene

SMIM10L2B-AS1 (SMIM10L2B Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SMIM10L2B-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SMIM10L2B-AS1 Gene

Genomics for SMIM10L2B-AS1 Gene

GeneHancer (GH) Regulatory Elements for SMIM10L2B-AS1 Gene

Promoters and enhancers for SMIM10L2B-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ135097 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas 0.3 +38.5 38516 2.8 ZBTB26 KLF4 CUX1 MYC CTBP1 KLF9 CREB1 SP2 ZBTB17 SAP130 SMIM10L2B lnc-SMIM10L2B-1 RTL8A lnc-RTL8C-4 SMIM10L2B-AS1
GH0XJ135086 Enhancer 0.9 Ensembl ENCODE 0.3 +26.9 26945 1.1 CTCF ZIC2 REST RFX1 RAD21 TRIM22 SMC3 KLF13 FOSL1 ELF1 RTL8B lnc-RTL8C-4 lnc-SMIM10L2B-1 SMIM10L2B-AS1
GH0XJ135053 Enhancer 0.5 Ensembl 0.4 -5.9 -5885 0.4 RFX1 CEBPB JUND ZNF384 RXRA HNF4A ZBTB49 SP1 RTL8A INTS6L SMIM10L2B-AS1
GH0XJ135114 Enhancer 0.7 ENCODE 0.2 +54.9 54921 0.1 EP300 RCOR1 BCL11A BATF ELF1 IRF4 POU2F2 IKZF1 NFATC3 MAZ ETDB lnc-ETDB-1 SMIM10L2B SMIM10L2B-AS1
GH0XJ135120 Enhancer 0.2 Ensembl 0.2 +61.7 61715 0.8 ETDB lnc-ETDB-1 ENSG00000223809 SMIM10L2B-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SMIM10L2B-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SMIM10L2B-AS1 Gene

Genomic Locations for SMIM10L2B-AS1 Gene
chrX:135,059,685-135,123,952
(GRCh38/hg38)
Size:
64,268 bases
Orientation:
Plus strand
chrX:134,193,715-134,257,880
(GRCh37/hg19)
Size:
64,166 bases
Orientation:
Plus strand

Genomic View for SMIM10L2B-AS1 Gene

Genes around SMIM10L2B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMIM10L2B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMIM10L2B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMIM10L2B-AS1 Gene

Proteins for SMIM10L2B-AS1 Gene

Post-translational modifications for SMIM10L2B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMIM10L2B-AS1 Gene

Domains & Families for SMIM10L2B-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SMIM10L2B-AS1 Gene

Function for SMIM10L2B-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMIM10L2B-AS1 Gene

Localization for SMIM10L2B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMIM10L2B-AS1 Gene

Pathways & Interactions for SMIM10L2B-AS1 Gene

PathCards logo

SuperPathways for SMIM10L2B-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SMIM10L2B-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SMIM10L2B-AS1 Gene

Drugs & Compounds for SMIM10L2B-AS1 Gene

No Compound Related Data Available

Transcripts for SMIM10L2B-AS1 Gene

mRNA/cDNA for SMIM10L2B-AS1 Gene

6 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
2 LncBook transcripts :
4 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SMIM10L2B-AS1 Gene

No ASD Table

Relevant External Links for SMIM10L2B-AS1 Gene

GeneLoc Exon Structure for
SMIM10L2B-AS1

Expression for SMIM10L2B-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SMIM10L2B-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMIM10L2B-AS1 Gene

Orthologs for SMIM10L2B-AS1 Gene

Evolution for SMIM10L2B-AS1 Gene

ENSEMBL:
Gene Tree for SMIM10L2B-AS1 (if available)
TreeFam:
Gene Tree for SMIM10L2B-AS1 (if available)

No data available for Orthologs for SMIM10L2B-AS1 Gene

Paralogs for SMIM10L2B-AS1 Gene

No data available for Paralogs for SMIM10L2B-AS1 Gene

Variants for SMIM10L2B-AS1 Gene

Additional dbSNP identifiers (rs#s) for SMIM10L2B-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for SMIM10L2B-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2758894 CNV gain 17122850
esv3577267 CNV gain 25503493
nsv469825 CNV loss 16826518

Additional Variant Information for SMIM10L2B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMIM10L2B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SMIM10L2B-AS1 Gene

Disorders for SMIM10L2B-AS1 Gene

Additional Disease Information for SMIM10L2B-AS1

No disorders were found for SMIM10L2B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMIM10L2B-AS1 Gene

Publications for SMIM10L2B-AS1 Gene

  1. Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls. (PMID: 27816668) Long W … Ding H (Clinica chimica acta; international journal of clinical chemistry 2016) 2 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54
  3. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 54

No data available for Mastermind for SMIM10L2B-AS1 Gene

Products for SMIM10L2B-AS1 Gene

Sources for SMIM10L2B-AS1 Gene