Aliases for SMG7-AS1 Gene

Subcategory (RNA class) for SMG7-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for SMG7-AS1 Gene

  • SMG7 Antisense RNA 1 2 3 5
  • SMG7 Antisense RNA 1 (Non-Protein Coding) 2 3
  • SMG7-AS1 2 168
  • HSALNG0008972 167
  • NONHSAG003688 92
  • DKFZP564C196 3

External Ids for SMG7-AS1 Gene

Previous GeneCards Identifiers for SMG7-AS1 Gene

  • GC01M183432

Summaries for SMG7-AS1 Gene

GeneCards Summary for SMG7-AS1 Gene

SMG7-AS1 (SMG7 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with SMG7-AS1 include Atrial Septal Defect 5.

Additional gene information for SMG7-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SMG7-AS1 Gene

Genomics for SMG7-AS1 Gene

GeneHancer (GH) Regulatory Elements for SMG7-AS1 Gene

Promoters and enhancers for SMG7-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J183469 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 517.8 +1.0 996 4.3 RXRA HNRNPK FOXK2 ZBTB40 ZNF217 EP300 CTCF ZSCAN5C TCF12 SIN3A SMG7 SMG7-AS1 DHX9 LAMC1-AS1 HMGN1P4 LAMC1 RNASEL LAMC2 ENSG00000271387 NCF2
GH01J184385 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 37.4 -915.2 -915179 4.7 EP300 ZSCAN5C JUND TEAD4 ZFX ZNF639 ZIC2 ZBTB10 POLR2A ZNF423 ENSG00000271387 C1orf21 SMG7-AS1 SWT1 ENSG00000273004 SMG7 EDEM3 piR-41306-017
GH01J183459 Enhancer 1.1 Ensembl ENCODE dbSUPER 17.4 +10.6 10563 5 HNRNPK TEAD4 AFF1 CTBP1 HDAC2 ZNF282 NFIC IRF1 CEBPB NEUROD1 SMG7-AS1 SMG7 lnc-NMNAT2-1 LOC105371646
GH01J183466 Enhancer 1 FANTOM5 Ensembl ENCODE 16.9 +5.4 5449 2.4 TCF12 FOXA2 FOS FOSL2 CEBPB ZBTB33 JUN JUND EP300 STAT3 SMG7-AS1 NCF2 ARPC5 SMG7 lnc-NMNAT2-1
GH01J182617 Enhancer 1.3 ENCODE CraniofacialAtlas dbSUPER 11.3 +854.7 854656 1.2 EP300 ZSCAN5C ZNF639 ZNF10 ZIC2 ZBTB10 ZNF623 TRIM28 KLF7 ATF2 SMG7-AS1 DHX9 LINC01686 lnc-RGS8-6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SMG7-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SMG7-AS1 Gene

Genomic Locations for SMG7-AS1 Gene
chr1:183,449,706-183,472,850
(GRCh38/hg38)
Size:
23,145 bases
Orientation:
Minus strand
chr1:183,430,009-183,441,117
(GRCh37/hg19)
Size:
11,109 bases
Orientation:
Minus strand

Genomic View for SMG7-AS1 Gene

Genes around SMG7-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMG7-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMG7-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMG7-AS1 Gene

Proteins for SMG7-AS1 Gene

Post-translational modifications for SMG7-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMG7-AS1 Gene

Domains & Families for SMG7-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SMG7-AS1 Gene

Function for SMG7-AS1 Gene

Phenotypes From GWAS Catalog for SMG7-AS1 Gene

Phenotypes for SMG7-AS1 Gene

genes like me logo Genes that share phenotypes with SMG7-AS1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMG7-AS1 Gene

Localization for SMG7-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMG7-AS1 Gene

Pathways & Interactions for SMG7-AS1 Gene

PathCards logo

SuperPathways for SMG7-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SMG7-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SMG7-AS1 Gene

Drugs & Compounds for SMG7-AS1 Gene

No Compound Related Data Available

Transcripts for SMG7-AS1 Gene

mRNA/cDNA for SMG7-AS1 Gene

20 RNACentral transcripts :
1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
7 LncBook transcripts :
16 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SMG7-AS1 Gene

No ASD Table

Relevant External Links for SMG7-AS1 Gene

GeneLoc Exon Structure for
SMG7-AS1

Expression for SMG7-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SMG7-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SMG7-AS1 Gene

This gene is overexpressed in Testis (x29.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SMG7-AS1

SOURCE GeneReport for Unigene cluster for SMG7-AS1 Gene:

Hs.127384
genes like me logo Genes that share expression patterns with SMG7-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMG7-AS1 Gene

Orthologs for SMG7-AS1 Gene

Evolution for SMG7-AS1 Gene

ENSEMBL:
Gene Tree for SMG7-AS1 (if available)
TreeFam:
Gene Tree for SMG7-AS1 (if available)

No data available for Orthologs for SMG7-AS1 Gene

Paralogs for SMG7-AS1 Gene

No data available for Paralogs for SMG7-AS1 Gene

Variants for SMG7-AS1 Gene

Additional dbSNP identifiers (rs#s) for SMG7-AS1 Gene

Additional Variant Information for SMG7-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMG7-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SMG7-AS1 Gene

Disorders for SMG7-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SMG7-AS1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
atrial septal defect 5
  • asd5
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SMG7-AS1

genes like me logo Genes that share disorders with SMG7-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SMG7-AS1 Gene

Publications for SMG7-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 54

Products for SMG7-AS1 Gene

Sources for SMG7-AS1 Gene