Aliases for SMG7-AS1 Gene

Data sources for SMG7-AS1 Gene:

Subcategory (RNA class) for SMG7-AS1 Gene

lncRNA

Aliases for SMG7-AS1 Gene

External Ids for SMG7-AS1 Gene

Previous GeneCards Identifiers for SMG7-AS1 Gene

  • GC01M183432

Summaries for SMG7-AS1 Gene

GeneCards Summary for SMG7-AS1 Gene

SMG7-AS1 (SMG7 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with SMG7-AS1 include Atrial Septal Defect 5.

Additional gene information for SMG7-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SMG7-AS1 Gene

Genomics for SMG7-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SMG7-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SMG7-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SMG7-AS1 Gene

Latest Assembly
chr1:183,449,705-183,472,850
(GRCh38/hg38)
Size:
23,146 bases
Orientation:
Minus strand

Previous Assembly
chr1:183,430,009-183,441,117
(GRCh37/hg19 by Entrez Gene)
Size:
11,109 bases
Orientation:
Minus strand

chr1:183,430,009-183,440,881
(GRCh37/hg19 by Ensembl)
Size:
10,873 bases
Orientation:
Minus strand

Genomic View for SMG7-AS1 Gene

Genes around SMG7-AS1 on UCSC Golden Path with GeneCards custom track
SMG7-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SMG7-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMG7-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMG7-AS1 Gene

Proteins for SMG7-AS1 Gene

Post-translational modifications for SMG7-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMG7-AS1 Gene

Domains & Families for SMG7-AS1 Gene

Gene Families for SMG7-AS1 Gene

genes like me logo Genes that share domains with SMG7-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SMG7-AS1 Gene

Function for SMG7-AS1 Gene

Phenotypes From GWAS Catalog for SMG7-AS1 Gene

Phenotypes for SMG7-AS1 Gene

genes like me logo Genes that share phenotypes with SMG7-AS1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMG7-AS1 Gene

Localization for SMG7-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMG7-AS1 Gene

Pathways & Interactions for SMG7-AS1 Gene

PathCards logo

SuperPathways for SMG7-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SMG7-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SMG7-AS1 Gene

Drugs & Compounds for SMG7-AS1 Gene

No Compound Related Data Available

Transcripts for SMG7-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SMG7-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008BE3AE_9606 lncRNA 466 4

Ensembl: ENST00000432837 (view in UCSC) ,

LncBook: HSALNT0018548,

LNCipedia: SMG7-AS1:5,

NONCODE: NONHSAT008356.2,

URS00008B6003_9606 lncRNA 2225 3

Ensembl: ENST00000421703 (view in UCSC) ,

LncBook: HSALNT0018546,

LNCipedia: SMG7-AS1:4,

URS000075EEAE_9606 lncRNA 2454 1

RefSeq: NR_040063,

URS0000EEBCF6_9606 lncRNA 1086 1

Ensembl: ENST00000663067 (view in UCSC) ,

URS00008B8119_9606 lncRNA 566 3

LncBook: HSALNT0018551,

LNCipedia: SMG7-AS1:1,

NONCODE: NONHSAT008357.2,

SMG7-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SMG7-AS1 Gene

3 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMG7-AS1 Gene

No ASD Table

Relevant External Links for SMG7-AS1 Gene

GeneLoc Exon Structure for
SMG7-AS1

Expression for SMG7-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SMG7-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SMG7-AS1 Gene

This gene is overexpressed in Testis (x29.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SMG7-AS1

SOURCE GeneReport for Unigene cluster for SMG7-AS1 Gene:

Hs.127384
genes like me logo Genes that share expression patterns with SMG7-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMG7-AS1 Gene

Orthologs for SMG7-AS1 Gene

Evolution for SMG7-AS1 Gene

ENSEMBL:
Gene Tree for SMG7-AS1 (if available)
TreeFam:
Gene Tree for SMG7-AS1 (if available)

No data available for Orthologs for SMG7-AS1 Gene

Paralogs for SMG7-AS1 Gene

No data available for Paralogs for SMG7-AS1 Gene

Variants for SMG7-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SMG7-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for SMG7-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMG7-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SMG7-AS1 Gene

Disorders for SMG7-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SMG7-AS1 Gene - From: COP

Disorder Aliases PubMed IDs
atrial septal defect 5
  • asd5
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SMG7-AS1

genes like me logo Genes that share disorders with SMG7-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SMG7-AS1 Gene

Publications for SMG7-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3

Products for SMG7-AS1 Gene

Sources for SMG7-AS1 Gene