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Aliases for SMG6-IT1 Gene

Subcategory (RNA class) for SMG6-IT1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for SMG6-IT1 Gene

  • SMG6 Intronic Transcript 1 2 3 5
  • SMG6 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • Chromosome 17 Open Reading Frame 6 2
  • C17orf6 3

External Ids for SMG6-IT1 Gene

ORGUL Members for SMG6-IT1 Gene

Previous HGNC Symbols for SMG6-IT1 Gene

  • C17orf6

Previous GeneCards Identifiers for SMG6-IT1 Gene

  • GC17U901711

Summaries for SMG6-IT1 Gene

GeneCards Summary for SMG6-IT1 Gene

SMG6-IT1 (SMG6 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SMG6-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMG6-IT1 Gene

Genomics for SMG6-IT1 Gene

GeneHancer (GH) Regulatory Elements for SMG6-IT1 Gene

Promoters and enhancers for SMG6-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I002235 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.8 -2.6 -2587 7.3 PKNOX1 ZSCAN4 BATF KLF5 IRF4 RAD21 ZNF143 ATF7 FOS BCLAF1 SMG6 SRR HIC1 ENSG00000236457 ENSG00000236838 OVCA2 DPH1 TSR1 SGSM2 SMG6-IT1
GH17I002242 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -8.3 -8321 3 HDGF PKNOX1 RB1 MLX ARID4B SIN3A ZNF2 ZNF48 RAD21 ARID2 DPH1 PRPF8 SMYD4 RN7SL608P RPA1 METTL16 ENSG00000263345 SGSM2 SRR WDR81
GH17I002252 Enhancer 0.8 dbSUPER 0.4 -17.6 -17639 3 HDGF PKNOX1 SMAD1 ZFP64 BMI1 BATF IRF4 SCRT2 ATF7 ETV6 ENSG00000280242 SRR SMG6 HNRNPA1P16 SGSM2 ENSG00000263050 METTL16 DPH1 SMG6-IT1
GH17I002249 Enhancer 0.6 ENCODE dbSUPER 0.4 -14.5 -14461 1.4 ZFHX2 JUND EGR2 SRR ENSG00000280242 SMG6-IT1 SMG6
GH17I002247 Enhancer 0.5 dbSUPER 0.4 -12.4 -12387 1.1 FOXA2 EBF1 ZBTB33 FOXA1 SRR ENSG00000280242 SMG6-IT1 SMG6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SMG6-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SMG6-IT1 Gene

Genomic Locations for SMG6-IT1 Gene
chr17:2,235,713-2,236,086
(GRCh38/hg38)
Size:
374 bases
Orientation:
Minus strand

Genomic View for SMG6-IT1 Gene

Genes around SMG6-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMG6-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMG6-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SMG6-IT1 Gene

Proteins for SMG6-IT1 Gene

Post-translational modifications for SMG6-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMG6-IT1 Gene

Domains & Families for SMG6-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMG6-IT1 Gene

Function for SMG6-IT1 Gene

Phenotypes From GWAS Catalog for SMG6-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMG6-IT1 Gene

Localization for SMG6-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMG6-IT1 Gene

Pathways & Interactions for SMG6-IT1 Gene

SuperPathways for SMG6-IT1 Gene

No Data Available

Interacting Proteins for SMG6-IT1 Gene

Gene Ontology (GO) - Biological Process for SMG6-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMG6-IT1 Gene

Drugs & Compounds for SMG6-IT1 Gene

No Compound Related Data Available

Transcripts for SMG6-IT1 Gene

mRNA/cDNA for SMG6-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SMG6-IT1 Gene

No ASD Table

Relevant External Links for SMG6-IT1 Gene

GeneLoc Exon Structure for
SMG6-IT1
ECgene alternative splicing isoforms for
SMG6-IT1

Expression for SMG6-IT1 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMG6-IT1 Gene

Orthologs for SMG6-IT1 Gene

Evolution for SMG6-IT1 Gene

ENSEMBL:
Gene Tree for SMG6-IT1 (if available)
TreeFam:
Gene Tree for SMG6-IT1 (if available)

No data available for Orthologs for SMG6-IT1 Gene

Paralogs for SMG6-IT1 Gene

No data available for Paralogs for SMG6-IT1 Gene

Variants for SMG6-IT1 Gene

Additional Variant Information for SMG6-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMG6-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SMG6-IT1 Gene

Disorders for SMG6-IT1 Gene

Additional Disease Information for SMG6-IT1

No disorders were found for SMG6-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMG6-IT1 Gene

Publications for SMG6-IT1 Gene

No publications were found for SMG6-IT1 Gene.

Products for SMG6-IT1 Gene

Sources for SMG6-IT1 Gene

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