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Aliases for SMG1P5 Gene

Aliases for SMG1P5 Gene

  • SMG1 Pseudogene 5 2 3 5
  • SMG1P5, Nonsense Mediated MRNA Decay Associated PI3K Related Kinase Pseudogene 5 2 3
  • Smg-1 Homolog, Phosphatidylinositol 3-Kinase-Related Kinase Pseudogene 3

External Ids for SMG1P5 Gene

Summaries for SMG1P5 Gene

GeneCards Summary for SMG1P5 Gene

SMG1P5 (SMG1 Pseudogene 5) is a Pseudogene.

Additional gene information for SMG1P5 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMG1P5 Gene

Genomics for SMG1P5 Gene

GeneHancer (GH) Regulatory Elements for SMG1P5 Gene

Promoters and enhancers for SMG1P5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J030333 Promoter/Enhancer 1.5 Ensembl ENCODE 613.4 +0.7 673 4.2 ZNF652 ZFX ELF3 MNT NKRF POLR2A CEBPG RERE ZNF687 TFE3 SMG1P5 ENSG00000273724 LOC100421031 ZNF785 YPEL3 GC16M030274
GH16J030566 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 100.3 -234.6 -234560 6.1 HDGF CC2D1A SP1 ZFX ELF3 MNT SIX5 ZNF148 NKRF ZNF121 ZNF688 SETD1A SRCAP ENSG00000260267 NPIPB13 ZNF747 INO80E ZNF764 C16orf58 SMG1P5
GH16J030051 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 101.8 +282.0 281958 4.6 MTA3 CC2D1A ZFX SP1 ELF3 CTCF MNT NKRF ZNF121 CEBPG ALDOA LOC112694756 TLCD3B SETD1A SRCAP NPIPB12 INO80E ZNF764 NPIPB13 ZNF747
GH16J029803 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 94.4 +524.8 524832 14.5 MTA3 SP1 ZNF652 ZFX CTCF CC2D1A ELF3 ZKSCAN8 MNT SIX5 PRRT2 ENSG00000280607 ENSG00000280893 GC16M029811 GC16P029809 MAZ PIR38319 PIR44883 PIR52049 PIR43581
GH16J030367 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 58.4 -40.5 -40502 17.4 HDGF SP1 CC2D1A ELF3 ZFX MNT ZNF148 NKRF POLR2A MLLT1 MYLPF TBC1D10B SETD1A SRCAP NPIPB12 INO80E SMG1P5 ZNF764 FBRS ZNF747
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SMG1P5 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SMG1P5 Gene

Genomic Locations for SMG1P5 Gene
chr16:30,267,553-30,335,374
(GRCh38/hg38)
Size:
67,822 bases
Orientation:
Minus strand
chr16:30,234,230-30,346,695
(GRCh37/hg19)
Size:
112,466 bases
Orientation:
Minus strand

Genomic View for SMG1P5 Gene

Genes around SMG1P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMG1P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMG1P5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMG1P5 Gene

Proteins for SMG1P5 Gene

Post-translational modifications for SMG1P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMG1P5 Gene

Domains & Families for SMG1P5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMG1P5 Gene

Function for SMG1P5 Gene

Phenotypes From GWAS Catalog for SMG1P5 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMG1P5 Gene

Localization for SMG1P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMG1P5 Gene

Pathways & Interactions for SMG1P5 Gene

PathCards logo

SuperPathways for SMG1P5 Gene

No Data Available

Interacting Proteins for SMG1P5 Gene

Gene Ontology (GO) - Biological Process for SMG1P5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMG1P5 Gene

Drugs & Compounds for SMG1P5 Gene

No Compound Related Data Available

Transcripts for SMG1P5 Gene

mRNA/cDNA for SMG1P5 Gene

(4) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SMG1P5 Gene

No ASD Table

Relevant External Links for SMG1P5 Gene

GeneLoc Exon Structure for
SMG1P5
ECgene alternative splicing isoforms for
SMG1P5

Expression for SMG1P5 Gene

NURSA nuclear receptor signaling pathways regulating expression of SMG1P5 Gene:

SMG1P5
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMG1P5 Gene

Orthologs for SMG1P5 Gene

Evolution for SMG1P5 Gene

ENSEMBL:
Gene Tree for SMG1P5 (if available)
TreeFam:
Gene Tree for SMG1P5 (if available)

No data available for Orthologs for SMG1P5 Gene

Paralogs for SMG1P5 Gene

No data available for Paralogs for SMG1P5 Gene

Variants for SMG1P5 Gene

Sequence variations from dbSNP and Humsavar for SMG1P5 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000205779 -- 30,312,766(-) T/C intron_variant
rs1000235096 -- 30,295,060(-) C/T intron_variant
rs1000255422 -- 30,306,800(-) A/C intron_variant
rs1000507440 -- 30,325,301(-) G/T intron_variant
rs1000565920 -- 30,295,584(-) T/A/C/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SMG1P5 Gene

Variant ID Type Subtype PubMed ID
esv22245 CNV gain 19812545
esv2758642 CNV gain 17122850
esv3369844 CNV duplication 20981092
esv3386415 CNV duplication 20981092
esv3427338 CNV duplication 20981092
esv3638384 CNV loss 21293372
esv3638385 CNV loss 21293372
nsv1078393 CNV duplication 25765185
nsv1141284 CNV duplication 24896259
nsv1148121 CNV duplication 26484159
nsv9433 CNV loss 18304495
nsv9434 CNV loss 18304495
nsv9437 CNV loss 18304495
nsv953801 CNV duplication 24416366
nsv978131 CNV duplication 23825009
nsv984413 CNV duplication 23825009

Additional Variant Information for SMG1P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMG1P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SMG1P5 Gene

Disorders for SMG1P5 Gene

Additional Disease Information for SMG1P5

No disorders were found for SMG1P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMG1P5 Gene

Publications for SMG1P5 Gene

  1. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 58
  2. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PMID: 15342556) Suzuki Y … Sugano S (Genome research 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  4. Genome duplications and other features in 12 Mb of DNA sequence from human chromosome 16p and 16q. (PMID: 10493829) Loftus BJ … Adams MD (Genomics 1999) 3 58

Products for SMG1P5 Gene

Sources for SMG1P5 Gene

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