Aliases for SMG1P5 Gene

Aliases for SMG1P5 Gene

  • SMG1 Pseudogene 5 2 3 5
  • SMG1P5, Nonsense Mediated MRNA Decay Associated PI3K Related Kinase Pseudogene 5 2 3
  • Smg-1 Homolog, Phosphatidylinositol 3-Kinase-Related Kinase Pseudogene 3
  • SMG1P5 5

External Ids for SMG1P5 Gene

Previous GeneCards Identifiers for SMG1P5 Gene

  • GC16M030259

Summaries for SMG1P5 Gene

GeneCards Summary for SMG1P5 Gene

SMG1P5 (SMG1 Pseudogene 5) is a Pseudogene.

Additional gene information for SMG1P5 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SMG1P5 Gene

Genomics for SMG1P5 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SMG1P5 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SMG1P5 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SMG1P5 Gene

Latest Assembly
chr16:30,267,553-30,335,374
(GRCh38/hg38)
Size:
67,822 bases
Orientation:
Minus strand

Previous Assembly
chr16:30,296,339-30,346,695
(GRCh37/hg19 by Entrez Gene)
Size:
50,357 bases
Orientation:
Minus strand

chr16:30,234,230-30,346,695
(GRCh37/hg19 by Ensembl)
Size:
112,466 bases
Orientation:
Minus strand

Genomic View for SMG1P5 Gene

Genes around SMG1P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMG1P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMG1P5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMG1P5 Gene

Proteins for SMG1P5 Gene

Post-translational modifications for SMG1P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMG1P5 Gene

Domains & Families for SMG1P5 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SMG1P5 Gene

Function for SMG1P5 Gene

Phenotypes From GWAS Catalog for SMG1P5 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMG1P5 Gene

Localization for SMG1P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMG1P5 Gene

Pathways & Interactions for SMG1P5 Gene

PathCards logo

SuperPathways for SMG1P5 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SMG1P5 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SMG1P5 Gene

Drugs & Compounds for SMG1P5 Gene

No Compound Related Data Available

Transcripts for SMG1P5 Gene

mRNA/cDNA for SMG1P5 Gene

4 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMG1P5 Gene

No ASD Table

Relevant External Links for SMG1P5 Gene

GeneLoc Exon Structure for
SMG1P5

Expression for SMG1P5 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SMG1P5

No Expression Related Data Available

Primer products for research

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMG1P5 Gene

Orthologs for SMG1P5 Gene

Evolution for SMG1P5 Gene

ENSEMBL:
Gene Tree for SMG1P5 (if available)
TreeFam:
Gene Tree for SMG1P5 (if available)

No data available for Orthologs for SMG1P5 Gene

Paralogs for SMG1P5 Gene

No data available for Paralogs for SMG1P5 Gene

Variants for SMG1P5 Gene

Structural Variations from Database of Genomic Variants (DGV) for SMG1P5 Gene

Variant ID Type Subtype PubMed ID
esv22245 CNV gain 19812545
esv2758642 CNV gain 17122850
esv3369844 CNV duplication 20981092
esv3386415 CNV duplication 20981092
esv3427338 CNV duplication 20981092
esv3638384 CNV loss 21293372
esv3638385 CNV loss 21293372
nsv1078393 CNV duplication 25765185
nsv1141284 CNV duplication 24896259
nsv1148121 CNV duplication 26484159
nsv9433 CNV loss 18304495
nsv9434 CNV loss 18304495
nsv9437 CNV loss 18304495
nsv953801 CNV duplication 24416366
nsv978131 CNV duplication 23825009
nsv984413 CNV duplication 23825009

Additional Variant Information for SMG1P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMG1P5

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance and Variation tolerance for SMG1P5 Gene

Disorders for SMG1P5 Gene

Additional Disease Information for SMG1P5

No disorders were found for SMG1P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMG1P5 Gene

Publications for SMG1P5 Gene

  1. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3
  2. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PMID: 15342556) Suzuki Y … Sugano S (Genome research 2004) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
  4. Genome duplications and other features in 12 Mb of DNA sequence from human chromosome 16p and 16q. (PMID: 10493829) Loftus BJ … Adams MD (Genomics 1999) 3

Products for SMG1P5 Gene

Sources for SMG1P5 Gene