Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SMG1P4 Gene

Aliases for SMG1P4 Gene

  • SMG1 Pseudogene 4 2 3 5
  • SMG1P4, Nonsense Mediated MRNA Decay Associated PI3K Related Kinase Pseudogene 4 2

External Ids for SMG1P4 Gene

Summaries for SMG1P4 Gene

GeneCards Summary for SMG1P4 Gene

SMG1P4 (SMG1 Pseudogene 4) is a Pseudogene.

Additional gene information for SMG1P4 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMG1P4 Gene

Genomics for SMG1P4 Gene

GeneHancer (GH) Regulatory Elements for SMG1P4 Gene

Promoters and enhancers for SMG1P4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I021819 Promoter/Enhancer 1.5 Ensembl ENCODE 97.1 +98.9 98855 1.8 HDGF SMAD1 ZFP64 SIN3A FEZF1 ZNF2 YY1 ZNF213 ZNF302 ZNF207 RRN3P1 NPIPB4 NPIPB5 NPIPB3 SMG1P3 ENSG00000260635 SMG1P4 SMG1P1 POLR3E ENSG00000260905
GH16I021918 Enhancer 0.2 Ensembl 550.8 +0.6 555 0.8 SMG1P4 GC16M021908 NPIPB4
GH16I022006 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE 42.7 -89.1 -89101 2.8 PKNOX1 ATF1 FOXA2 ARID4B SIN3A ZNF48 YY1 ZNF213 ZNF548 ATF7 C16orf52 ENSG00000275445 GC16P022007 SMG1P4 SMG1P1 SMG1P3 NPIPB4 NPIPB5 NPIPB3 ENSG00000260635
GH16I022296 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 38.9 -378.6 -378626 3.2 CLOCK MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 POLR3E TRL-AAG2-4 C16orf52 NPIPB4 SMG1P3 NPIPB3 RRN3P1 NPIPB5 SMG1P1 SMG1P4
GH16I021950 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 33.4 -33.5 -33549 3.9 CLOCK DMAP1 YBX1 YY1 SLC30A9 E2F8 ZNF143 SP3 NFYC MEF2D ENSG00000274460 GC16M021951 UQCRC2 ENSG00000260635 SMG1P1 SMG1P4 SMG1P3 NPIPB4 NPIPB5 NPIPB3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SMG1P4 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SMG1P4 Gene

Genomic Locations for SMG1P4 Gene
chr16:21,879,337-21,919,156
(GRCh38/hg38)
Size:
39,820 bases
Orientation:
Minus strand
chr16:21,890,658-21,927,345
(GRCh37/hg19)

Genomic View for SMG1P4 Gene

Genes around SMG1P4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMG1P4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMG1P4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMG1P4 Gene

Proteins for SMG1P4 Gene

Post-translational modifications for SMG1P4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMG1P4 Gene

Domains & Families for SMG1P4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMG1P4 Gene

Function for SMG1P4 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMG1P4 Gene

Localization for SMG1P4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMG1P4 Gene

Pathways & Interactions for SMG1P4 Gene

SuperPathways for SMG1P4 Gene

No Data Available

Interacting Proteins for SMG1P4 Gene

Gene Ontology (GO) - Biological Process for SMG1P4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMG1P4 Gene

Drugs & Compounds for SMG1P4 Gene

No Compound Related Data Available

Transcripts for SMG1P4 Gene

mRNA/cDNA for SMG1P4 Gene

(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMG1P4 Gene

No ASD Table

Relevant External Links for SMG1P4 Gene

GeneLoc Exon Structure for
SMG1P4
ECgene alternative splicing isoforms for
SMG1P4

Expression for SMG1P4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SMG1P4 Gene

NURSA nuclear receptor signaling pathways regulating expression of SMG1P4 Gene:

SMG1P4
genes like me logo Genes that share expression patterns with SMG1P4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMG1P4 Gene

Orthologs for SMG1P4 Gene

Evolution for SMG1P4 Gene

ENSEMBL:
Gene Tree for SMG1P4 (if available)
TreeFam:
Gene Tree for SMG1P4 (if available)

No data available for Orthologs for SMG1P4 Gene

Paralogs for SMG1P4 Gene

No data available for Paralogs for SMG1P4 Gene

Variants for SMG1P4 Gene

Additional Variant Information for SMG1P4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMG1P4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SMG1P4 Gene

Disorders for SMG1P4 Gene

No disorders were found for SMG1P4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SMG1P4 Gene

Publications for SMG1P4 Gene

No publications were found for SMG1P4 Gene.

Products for SMG1P4 Gene

Sources for SMG1P4 Gene

Content
Loading form....