SMG1P2 Gene (Pseudogene)

SMG1 Pseudogene 2

GC16M029704
GIFtS:
9
See more...

Aliases for SMG1P2 Gene

Aliases for SMG1P2 Gene

  • SMG1 Pseudogene 2 2 3 5
  • SMG1P2, Nonsense Mediated MRNA Decay Associated PI3K Related Kinase Pseudogene 2 2 3
  • Smg-1 Homolog, Phosphatidylinositol 3-Kinase-Related Kinase Pseudogene 3
  • SMG1P2 5

External Ids for SMG1P2 Gene

Previous GeneCards Identifiers for SMG1P2 Gene

  • GC16M029545
  • GC16M029568

Summaries for SMG1P2 Gene

GeneCards Summary for SMG1P2 Gene

SMG1P2 (SMG1 Pseudogene 2) is a Pseudogene.

Additional gene information for SMG1P2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SMG1P2 Gene

Genomics for SMG1P2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for SMG1P2 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SMG1P2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SMG1P2 Gene

Genomic Locations for SMG1P2 Gene
chr16:29,527,568-29,613,717
(GRCh38/hg38)
Size:
86,150 bases
Orientation:
Minus strand
chr16:29,538,889-29,606,395
(GRCh37/hg19)
Size:
67,507 bases
Orientation:
Minus strand

Genomic View for SMG1P2 Gene

Genes around SMG1P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMG1P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMG1P2 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SMG1P2 Gene

Proteins for SMG1P2 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SMG1P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMG1P2 Gene

Domains & Families for SMG1P2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SMG1P2 Gene

Function for SMG1P2 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for SMG1P2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMG1P2 Gene

Localization for SMG1P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMG1P2 Gene

Pathways & Interactions for SMG1P2 Gene

PathCards logo

SuperPathways for SMG1P2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SMG1P2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SMG1P2 Gene

Drugs & Compounds for SMG1P2 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SMG1P2 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SMG1P2 Gene

9 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMG1P2 Gene

No ASD Table

Relevant External Links for SMG1P2 Gene

GeneLoc Exon Structure for
SMG1P2

Expression for SMG1P2 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SMG1P2 Gene

mRNA expression in normal human tissues for SMG1P2 Gene
mRNA expression by GTEx for SMG1P2 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SMG1P2

genes like me logo Genes that share expression patterns with SMG1P2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMG1P2 Gene

Orthologs for SMG1P2 Gene

Evolution for SMG1P2 Gene

ENSEMBL:
Gene Tree for SMG1P2 (if available)
TreeFam:
Gene Tree for SMG1P2 (if available)

No data available for Orthologs for SMG1P2 Gene

Paralogs for SMG1P2 Gene

No data available for Paralogs for SMG1P2 Gene

Variants for SMG1P2 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Structural Variations from Database of Genomic Variants (DGV) for SMG1P2 Gene

Variant ID Type Subtype PubMed ID
esv22245 CNV gain 19812545
esv2658775 CNV deletion 23128226
esv2758641 CNV gain 17122850
esv2758642 CNV gain 17122850
esv29892 CNV gain 19812545
esv3322933 CNV duplication 20981092
esv3348348 CNV duplication 20981092
esv3368598 CNV duplication 20981092
esv3369316 CNV duplication 20981092
esv3369844 CNV duplication 20981092
esv3386415 CNV duplication 20981092
esv3409521 CNV duplication 20981092
esv3427338 CNV duplication 20981092
esv3638365 CNV loss 21293372
nsv1056249 CNV gain 25217958
nsv1078393 CNV duplication 25765185
nsv1139652 CNV duplication 24896259
nsv1141284 CNV duplication 24896259
nsv1146152 CNV duplication 26484159
nsv1148121 CNV duplication 26484159
nsv1150202 CNV duplication 26484159
nsv498862 CNV loss 21111241
nsv9428 CNV loss 18304495
nsv9433 CNV loss 18304495
nsv953801 CNV duplication 24416366
nsv954512 CNV deletion 24416366
nsv978058 CNV duplication 23825009
nsv978128 CNV duplication 23825009
nsv978131 CNV duplication 23825009
nsv984413 CNV duplication 23825009

Additional Variant Information for SMG1P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMG1P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for SMG1P2 Gene

Disorders for SMG1P2 Gene

Additional Disease Information for SMG1P2

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SMG1P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMG1P2 Gene

Publications for SMG1P2 Gene

  1. VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. (PMID: 29507755) Yue Y … Liu J (Cell discovery 2018) 3
  2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  5. Up-regulated expression of a novel gene in activated human peripheral blood mononuclear cells that is a truncated paralog of the human system L-amino acid transporter 1. (PMID: 12009310) Ito M … Tsurudome M (The international journal of biochemistry & cell biology 2002) 3

ExternalLinks

View latest publications for SMG1P2 gene in Mastermind

Products for SMG1P2 Gene

Sources for SMG1P2 Gene