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Aliases for SMG1P2 Gene

Aliases for SMG1P2 Gene

  • SMG1 Pseudogene 2 2 3 5
  • SMG1P2, Nonsense Mediated MRNA Decay Associated PI3K Related Kinase Pseudogene 2 2 3
  • Smg-1 Homolog, Phosphatidylinositol 3-Kinase-Related Kinase Pseudogene 3

External Ids for SMG1P2 Gene

Summaries for SMG1P2 Gene

GeneCards Summary for SMG1P2 Gene

SMG1P2 (SMG1 Pseudogene 2) is a Pseudogene.

Additional gene information for SMG1P2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMG1P2 Gene

Genomics for SMG1P2 Gene

GeneHancer (GH) Regulatory Elements for SMG1P2 Gene

Promoters and enhancers for SMG1P2 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J029593 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 616.2 +0.5 465 4.2 ZFX MNT ZNF148 NKRF POLR2A MLLT1 ZNF687 AHR MCM2 ZBTB7A SMG1P2 ENSG00000279583 NFATC2IP ATXN2L ENSG00000260853 ENSG00000260367 SPNS1 SMG1P5 ZNF785 ENSG00000261766
GH16J030566 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 97.4 -975.0 -974968 6.1 HDGF CC2D1A SP1 ZFX ELF3 MNT SIX5 ZNF148 NKRF ZNF121 ZNF688 SETD1A SRCAP ENSG00000260267 NPIPB13 ZNF747 INO80E ZNF764 C16orf58 SMG1P5
GH16J030051 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 99.5 -458.5 -458450 4.6 MTA3 CC2D1A ZFX SP1 ELF3 CTCF MNT NKRF ZNF121 CEBPG ALDOA LOC112694756 TLCD3B SETD1A SRCAP NPIPB12 INO80E ZNF764 NPIPB13 ZNF747
GH16J029803 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 84.4 -215.6 -215576 14.5 MTA3 SP1 ZNF652 ZFX CTCF CC2D1A ELF3 ZKSCAN8 MNT SIX5 PRRT2 ENSG00000280607 ENSG00000280893 GC16M029811 GC16P029809 MAZ PIR38319 PIR44883 PIR52049 PIR43581
GH16J030367 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 38.5 -780.9 -780910 17.4 HDGF SP1 CC2D1A ELF3 ZFX MNT ZNF148 NKRF POLR2A MLLT1 MYLPF TBC1D10B SETD1A SRCAP NPIPB12 INO80E SMG1P5 ZNF764 FBRS ZNF747
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SMG1P2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SMG1P2 Gene

Genomic Locations for SMG1P2 Gene
67,399 bases
Minus strand
67,507 bases
Minus strand

Genomic View for SMG1P2 Gene

Genes around SMG1P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMG1P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMG1P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMG1P2 Gene

Proteins for SMG1P2 Gene

Post-translational modifications for SMG1P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMG1P2 Gene

Domains & Families for SMG1P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMG1P2 Gene

Function for SMG1P2 Gene

Phenotypes From GWAS Catalog for SMG1P2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMG1P2 Gene

Localization for SMG1P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMG1P2 Gene

Pathways & Interactions for SMG1P2 Gene

PathCards logo

SuperPathways for SMG1P2 Gene

No Data Available

Interacting Proteins for SMG1P2 Gene

Gene Ontology (GO) - Biological Process for SMG1P2 Gene


No data available for Pathways by source and SIGNOR curated interactions for SMG1P2 Gene

Drugs & Compounds for SMG1P2 Gene

No Compound Related Data Available

Transcripts for SMG1P2 Gene

mRNA/cDNA for SMG1P2 Gene

(9) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMG1P2 Gene

No ASD Table

Relevant External Links for SMG1P2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SMG1P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SMG1P2 Gene

NURSA nuclear receptor signaling pathways regulating expression of SMG1P2 Gene:

genes like me logo Genes that share expression patterns with SMG1P2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMG1P2 Gene

Orthologs for SMG1P2 Gene

Evolution for SMG1P2 Gene

Gene Tree for SMG1P2 (if available)
Gene Tree for SMG1P2 (if available)

No data available for Orthologs for SMG1P2 Gene

Paralogs for SMG1P2 Gene

No data available for Paralogs for SMG1P2 Gene

Variants for SMG1P2 Gene

Sequence variations from dbSNP and Humsavar for SMG1P2 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000146294 -- 29,588,721(-) A/G intron_variant
rs1000174362 -- 29,594,402(-) G/A intron_variant
rs1000338120 -- 29,554,410(-) A/G intron_variant
rs1000343761 -- 29,598,947(-) C/G genic_upstream_transcript_variant, intron_variant
rs1000417243 -- 29,598,717(-) T/C genic_upstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SMG1P2 Gene

Variant ID Type Subtype PubMed ID
esv22245 CNV gain 19812545
esv2658775 CNV deletion 23128226
esv2758641 CNV gain 17122850
esv2758642 CNV gain 17122850
esv29892 CNV gain 19812545
esv3322933 CNV duplication 20981092
esv3348348 CNV duplication 20981092
esv3368598 CNV duplication 20981092
esv3369316 CNV duplication 20981092
esv3369844 CNV duplication 20981092
esv3386415 CNV duplication 20981092
esv3409521 CNV duplication 20981092
esv3427338 CNV duplication 20981092
esv3638365 CNV loss 21293372
nsv1056249 CNV gain 25217958
nsv1078393 CNV duplication 25765185
nsv1139652 CNV duplication 24896259
nsv1141284 CNV duplication 24896259
nsv1146152 CNV duplication 26484159
nsv1148121 CNV duplication 26484159
nsv1150202 CNV duplication 26484159
nsv498862 CNV loss 21111241
nsv9428 CNV loss 18304495
nsv9433 CNV loss 18304495
nsv953801 CNV duplication 24416366
nsv954512 CNV deletion 24416366
nsv978058 CNV duplication 23825009
nsv978128 CNV duplication 23825009
nsv978131 CNV duplication 23825009
nsv984413 CNV duplication 23825009

Additional Variant Information for SMG1P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SMG1P2 Gene

Disorders for SMG1P2 Gene

Additional Disease Information for SMG1P2

No disorders were found for SMG1P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMG1P2 Gene

Publications for SMG1P2 Gene

  1. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  5. Up-regulated expression of a novel gene in activated human peripheral blood mononuclear cells that is a truncated paralog of the human system L-amino acid transporter 1. (PMID: 12009310) Ito M … Tsurudome M (The international journal of biochemistry & cell biology 2002) 3 58

Products for SMG1P2 Gene

Sources for SMG1P2 Gene

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