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Aliases for SMG1P2 Gene

Aliases for SMG1P2 Gene

  • SMG1 Pseudogene 2 2 3 5
  • SMG1P2, Nonsense Mediated MRNA Decay Associated PI3K Related Kinase Pseudogene 2 2

External Ids for SMG1P2 Gene

Summaries for SMG1P2 Gene

GeneCards Summary for SMG1P2 Gene

SMG1P2 (SMG1 Pseudogene 2) is a Pseudogene.

Additional gene information for SMG1P2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMG1P2 Gene

Genomics for SMG1P2 Gene

GeneHancer (GH) Regulatory Elements for SMG1P2 Gene

Promoters and enhancers for SMG1P2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I029593 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 566.3 +0.0 42 3 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 POLR2B ZNF213 ZNF207 ZNF143 SMG1P2 ENSG00000279583 NFATC2IP ATXN2L ENSG00000260853 ENSG00000260367 SPNS1 SMG1P5 INO80E ENSG00000198106
GH16I030052 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 124.7 -459.2 -459239 3.1 CLOCK MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ALDOA FAM57B SETD1A SRCAP NPIPB12 INO80E SMG1P5 SMG1P2 ZNF764 ZNF747
GH16I030566 Promoter/Enhancer 2.3 FANTOM5 Ensembl ENCODE dbSUPER 122.6 -974.9 -974908 6 ZFP64 FEZF1 DMAP1 YY1 ZNF213 E2F8 ZNF416 ZNF143 ZNF548 SP3 SETD1A SRCAP ENSG00000260267 FUS INO80E ZNF747 NPIPB13 ZNF764 SMG1P5 SMG1P2
GH16I030367 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 52.4 -781.1 -781066 17 CLOCK FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 MYLPF ZNF48 TBC1D10B SEPT1 SETD1A SRCAP INO80E NPIPB12 SMG1P5 ZNF764
GH16I029803 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 52 -213.5 -213477 10.3 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 PRRT2 ENSG00000259952 ENSG00000280607 GC16P029807 GC16P029809 GC16P029941 PIR38319 MAZ PIR52049 PIR43581
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SMG1P2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SMG1P2 Gene

Genomic Locations for SMG1P2 Gene
chr16:29,527,568-29,594,966
(GRCh38/hg38)
Size:
67,399 bases
Orientation:
Minus strand
chr16:29,538,889-29,606,395
(GRCh37/hg19)

Genomic View for SMG1P2 Gene

Genes around SMG1P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMG1P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMG1P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMG1P2 Gene

Proteins for SMG1P2 Gene

Post-translational modifications for SMG1P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMG1P2 Gene

Domains & Families for SMG1P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMG1P2 Gene

Function for SMG1P2 Gene

Phenotypes From GWAS Catalog for SMG1P2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMG1P2 Gene

Localization for SMG1P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMG1P2 Gene

Pathways & Interactions for SMG1P2 Gene

SuperPathways for SMG1P2 Gene

No Data Available

Interacting Proteins for SMG1P2 Gene

Gene Ontology (GO) - Biological Process for SMG1P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMG1P2 Gene

Drugs & Compounds for SMG1P2 Gene

No Compound Related Data Available

Transcripts for SMG1P2 Gene

mRNA/cDNA for SMG1P2 Gene

(4) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMG1P2 Gene

No ASD Table

Relevant External Links for SMG1P2 Gene

GeneLoc Exon Structure for
SMG1P2
ECgene alternative splicing isoforms for
SMG1P2

Expression for SMG1P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SMG1P2 Gene

NURSA nuclear receptor signaling pathways regulating expression of SMG1P2 Gene:

SMG1P2
genes like me logo Genes that share expression patterns with SMG1P2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMG1P2 Gene

Orthologs for SMG1P2 Gene

Evolution for SMG1P2 Gene

ENSEMBL:
Gene Tree for SMG1P2 (if available)
TreeFam:
Gene Tree for SMG1P2 (if available)

No data available for Orthologs for SMG1P2 Gene

Paralogs for SMG1P2 Gene

No data available for Paralogs for SMG1P2 Gene

Variants for SMG1P2 Gene

Sequence variations from dbSNP and Humsavar for SMG1P2 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000146294 -- 29,588,721(-) A/G intron_variant
rs1000174362 -- 29,594,402(-) G/A intron_variant
rs1000338120 -- 29,554,410(-) A/G intron_variant
rs1000343761 -- 29,598,947(-) C/G genic_upstream_transcript_variant, intron_variant
rs1000417243 -- 29,598,717(-) T/C genic_upstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SMG1P2 Gene

Variant ID Type Subtype PubMed ID
esv22245 CNV gain 19812545
esv2658775 CNV deletion 23128226
esv2758641 CNV gain 17122850
esv2758642 CNV gain 17122850
esv29892 CNV gain 19812545
esv3322933 CNV duplication 20981092
esv3348348 CNV duplication 20981092
esv3368598 CNV duplication 20981092
esv3369316 CNV duplication 20981092
esv3369844 CNV duplication 20981092
esv3386415 CNV duplication 20981092
esv3409521 CNV duplication 20981092
esv3427338 CNV duplication 20981092
esv3638365 CNV loss 21293372
nsv1056249 CNV gain 25217958
nsv1078393 CNV duplication 25765185
nsv1139652 CNV duplication 24896259
nsv1141284 CNV duplication 24896259
nsv1146152 CNV duplication 26484159
nsv1148121 CNV duplication 26484159
nsv1150202 CNV duplication 26484159
nsv498862 CNV loss 21111241
nsv9428 CNV loss 18304495
nsv9433 CNV loss 18304495
nsv953801 CNV duplication 24416366
nsv954512 CNV deletion 24416366
nsv978058 CNV duplication 23825009
nsv978128 CNV duplication 23825009
nsv978131 CNV duplication 23825009
nsv984413 CNV duplication 23825009

Additional Variant Information for SMG1P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMG1P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SMG1P2 Gene

Disorders for SMG1P2 Gene

Additional Disease Information for SMG1P2

No disorders were found for SMG1P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMG1P2 Gene

Publications for SMG1P2 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  4. Up-regulated expression of a novel gene in activated human peripheral blood mononuclear cells that is a truncated paralog of the human system L-amino acid transporter 1. (PMID: 12009310) Ito M … Tsurudome M (The international journal of biochemistry & cell biology 2002) 3 58
  5. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for SMG1P2 Gene

Sources for SMG1P2 Gene

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