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Aliases for SMG1P1 Gene

Aliases for SMG1P1 Gene

  • SMG1 Pseudogene 1 2 3 5
  • SMG1P1, Nonsense Mediated MRNA Decay Associated PI3K Related Kinase Pseudogene 1 2 3
  • Smg-1 Homolog, Phosphatidylinositol 3-Kinase-Related Kinase Pseudogene 1 2 3
  • PI-3-Kinase-Related Kinase SMG-1 3

External Ids for SMG1P1 Gene

Previous GeneCards Identifiers for SMG1P1 Gene

  • GC16P022455
  • GC16P022460

Summaries for SMG1P1 Gene

GeneCards Summary for SMG1P1 Gene

SMG1P1 (SMG1 Pseudogene 1) is a Pseudogene.

Additional gene information for SMG1P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMG1P1 Gene

Genomics for SMG1P1 Gene

GeneHancer (GH) Regulatory Elements for SMG1P1 Gene

Promoters and enhancers for SMG1P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J022435 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 600.7 +0.5 493 4.6 ZFX ELF3 MNT NKRF POLR2A MLLT1 ZNF687 ZSCAN21 AHR ZNF24 RRN3P3 SMG1P1 PIR48235 CDR2 GC16P022428
GH16J022296 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 63.2 -139.3 -139325 3.4 ZNF473 ZNF652 SP1 ZFX CC2D1A ELF3 CTCF MNT ZNF148 NKRF POLR3E TRL-AAG2-4 NPIPB4 MOSMO SMG1P3 NPIPB3 RRN3P1 NPIPB5 SMG1P1 SMG1P4
GH16J021819 Promoter/Enhancer 1.5 Ensembl ENCODE 82.8 -616.7 -616707 2.6 NKRF ZNF121 POLR2A ZNF687 ZSCAN21 ZBTB7A YY1 ELF1 SP7 SP1 RRN3P1 NPIPB4 NPIPB5 NPIPB3 SMG1P3 ENSG00000260905 ENSG00000260635 SMG1P4 SMG1P1 POLR3E
GH16J021950 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 34.4 -484.2 -484217 4 MTA3 ZNF652 SP1 ZFX ELF3 CTCF MNT SIX5 CBFA2T2 NKRF ENSG00000274460 UQCRC2 GC16M021951 ENSG00000260635 SMG1P1 SMG1P4 SMG1P3 NPIPB4 NPIPB5 NPIPB3
GH16J022368 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 22.9 -64.7 -64715 7.8 ZNF652 ZFX SP1 ELF3 MNT NKRF POLR2A CEBPG RERE ZNF687 CDR2 SMG1P3 SMG1P1 POLR3E SMG1P4 MFSD13B NPIPB4 NPIPB5 NPIPB3 ENSG00000260306
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SMG1P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SMG1P1 Gene

Genomic Locations for SMG1P1 Gene
chr16:22,437,008-22,492,220
(GRCh38/hg38)
Size:
55,213 bases
Orientation:
Plus strand
chr16:22,448,329-22,503,541
(GRCh37/hg19)
Size:
55,213 bases
Orientation:
Plus strand

Genomic View for SMG1P1 Gene

Genes around SMG1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMG1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMG1P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMG1P1 Gene

Proteins for SMG1P1 Gene

Post-translational modifications for SMG1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMG1P1 Gene

Domains & Families for SMG1P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMG1P1 Gene

Function for SMG1P1 Gene

Phenotypes From GWAS Catalog for SMG1P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMG1P1 Gene

Localization for SMG1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMG1P1 Gene

Pathways & Interactions for SMG1P1 Gene

PathCards logo

SuperPathways for SMG1P1 Gene

No Data Available

Interacting Proteins for SMG1P1 Gene

Gene Ontology (GO) - Biological Process for SMG1P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMG1P1 Gene

Drugs & Compounds for SMG1P1 Gene

No Compound Related Data Available

Transcripts for SMG1P1 Gene

mRNA/cDNA for SMG1P1 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMG1P1 Gene

No ASD Table

Relevant External Links for SMG1P1 Gene

GeneLoc Exon Structure for
SMG1P1
ECgene alternative splicing isoforms for
SMG1P1

Expression for SMG1P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SMG1P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SMG1P1 Gene:

SMG1P1
genes like me logo Genes that share expression patterns with SMG1P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMG1P1 Gene

Orthologs for SMG1P1 Gene

Evolution for SMG1P1 Gene

ENSEMBL:
Gene Tree for SMG1P1 (if available)
TreeFam:
Gene Tree for SMG1P1 (if available)

No data available for Orthologs for SMG1P1 Gene

Paralogs for SMG1P1 Gene

No data available for Paralogs for SMG1P1 Gene

Variants for SMG1P1 Gene

Sequence variations from dbSNP and Humsavar for SMG1P1 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000562286 -- 22,463,895(+) C/T intron_variant
rs1000752226 -- 22,435,089(+) C/T upstream_transcript_variant
rs1001309075 -- 22,435,673(+) G/A upstream_transcript_variant
rs1001453833 -- 22,437,726(+) C/T intron_variant
rs1001970207 -- 22,438,808(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SMG1P1 Gene

Variant ID Type Subtype PubMed ID
dgv115n111 CNV duplication 26073780
dgv1318n106 CNV duplication 24896259
dgv2813n100 CNV loss 25217958
dgv33n68 CNV loss 17160897
dgv3n1 OTHER inversion 15895083
dgv47n16 OTHER inversion 17901297
esv25819 CNV gain 19812545
esv2758637 CNV gain+loss 17122850
esv32980 CNV loss 17666407
esv3344533 CNV duplication 20981092
esv3368991 OTHER inversion 20981092
esv998989 OTHER inversion 20482838
nsv1051649 CNV gain+loss 25217958
nsv1052004 CNV gain 25217958
nsv1077770 OTHER inversion 25765185
nsv1140248 OTHER inversion 24896259
nsv1148848 CNV duplication 26484159
nsv1160373 CNV duplication 26073780
nsv428324 CNV gain 18775914
nsv433439 CNV gain 18776910
nsv433440 CNV gain 18776910
nsv469882 CNV loss 16826518
nsv471691 CNV gain+loss 15918152
nsv499139 OTHER inversion 21111241
nsv571645 CNV loss 21841781
nsv7280 OTHER inversion 18451855
nsv833168 CNV gain+loss 17160897
nsv9405 CNV gain+loss 18304495
nsv977939 CNV duplication 23825009
nsv978115 CNV duplication 23825009
nsv984395 CNV duplication 23825009

Additional Variant Information for SMG1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMG1P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SMG1P1 Gene

Disorders for SMG1P1 Gene

Additional Disease Information for SMG1P1

No disorders were found for SMG1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMG1P1 Gene

Publications for SMG1P1 Gene

  1. [Screening of binding proteins to interferon-alpha promoter DNA by phage display technique]. (PMID: 16042889) Qu JH … Dai JZ (Zhonghua gan zang bing za zhi = Zhonghua ganzangbing zazhi = Chinese journal of hepatology 2005) 23 58
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  4. Prediction of the coding sequences of unidentified human genes. VI. The coding sequences of 80 new genes (KIAA0201-KIAA0280) deduced by analysis of cDNA clones from cell line KG-1 and brain. (PMID: 9039502) Nagase T … Nomura N (DNA research : an international journal for rapid publication of reports on genes and genomes 1996) 3 58

Products for SMG1P1 Gene

Sources for SMG1P1 Gene

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