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Aliases for SMCR2 Gene

Subcategory (RNA class) for SMCR2 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SMCR2 Gene

  • Smith-Magenis Syndrome Chromosome Region, Candidate 2 (Non-Protein Coding) 2 3 5
  • Smith-Magenis Syndrome Chromosome Region, Candidate 2 2
  • TCONS_00025215 3

External Ids for SMCR2 Gene

Previous GeneCards Identifiers for SMCR2 Gene

  • GC17U990313
  • GC17M017578

Summaries for SMCR2 Gene

GeneCards Summary for SMCR2 Gene

SMCR2 (Smith-Magenis Syndrome Chromosome Region, Candidate 2 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with SMCR2 include Smith-Magenis Syndrome.

Additional gene information for SMCR2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMCR2 Gene

Genomics for SMCR2 Gene

GeneHancer (GH) Regulatory Elements for SMCR2 Gene

Promoters and enhancers for SMCR2 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I017680 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 4.9 -3.1 -3092 7 HDGF ARNT ZFP64 ARID4B SIN3A ZNF207 ZNF143 FOS SP3 REST RAI1 TOM1L2 SMCR2 ENSG00000264885 PIR55057
GH17I017662 Enhancer 1.3 Ensembl ENCODE dbSUPER 5.1 +17.6 17606 1.7 HDGF PKNOX1 ATF1 FOXA2 TCF12 ZNF143 ATF7 FOS NFYC JUNB PEMT TOM1L2 SMCR2 ENSG00000273948 PIR47440
GH17I017675 Enhancer 1 ENCODE dbSUPER 0.4 +5.0 5014 1.6 ZSCAN4 IRF4 RARA ZNF366 EGR1 SCRT2 ATF7 BCLAF1 IKZF2 RUNX3 ENSG00000274836 ENSG00000273948 FOXO3B SMCR8 RPL13P12 TOM1L2 ENSG00000264885 SMCR2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SMCR2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SMCR2 Gene

Genomic Locations for SMCR2 Gene
7,177 bases
Minus strand

Genomic View for SMCR2 Gene

Genes around SMCR2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMCR2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMCR2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMCR2 Gene

Proteins for SMCR2 Gene

Post-translational modifications for SMCR2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMCR2 Gene

Domains & Families for SMCR2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMCR2 Gene

Function for SMCR2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMCR2 Gene

Localization for SMCR2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMCR2 Gene

Pathways & Interactions for SMCR2 Gene

SuperPathways for SMCR2 Gene

No Data Available

Interacting Proteins for SMCR2 Gene

Gene Ontology (GO) - Biological Process for SMCR2 Gene


No data available for Pathways by source and SIGNOR curated interactions for SMCR2 Gene

Drugs & Compounds for SMCR2 Gene

No Compound Related Data Available

Transcripts for SMCR2 Gene

mRNA/cDNA for SMCR2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SMCR2 Gene

No ASD Table

Relevant External Links for SMCR2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SMCR2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SMCR2 Gene

mRNA differential expression in normal tissues according to GTEx for SMCR2 Gene

This gene is overexpressed in Testis (x10.6).

NURSA nuclear receptor signaling pathways regulating expression of SMCR2 Gene:

genes like me logo Genes that share expression patterns with SMCR2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMCR2 Gene

Orthologs for SMCR2 Gene

Evolution for SMCR2 Gene

Gene Tree for SMCR2 (if available)
Gene Tree for SMCR2 (if available)

No data available for Orthologs for SMCR2 Gene

Paralogs for SMCR2 Gene

No data available for Paralogs for SMCR2 Gene

Variants for SMCR2 Gene

Sequence variations from dbSNP and Humsavar for SMCR2 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000079851 -- 17,674,548(-) C/T intron_variant
rs1000181828 -- 17,679,390(-) CTATTATC/C upstream_transcript_variant
rs1000235532 -- 17,679,647(-) C/T upstream_transcript_variant
rs1000283581 -- 17,677,405(-) C/A intron_variant
rs1000563935 -- 17,677,141(-) C/G intron_variant

Additional Variant Information for SMCR2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SMCR2 Gene

Disorders for SMCR2 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SMCR2 Gene - From: GeneCards

Disorder Aliases PubMed IDs
smith-magenis syndrome
  • sms
- elite association - COSMIC cancer census association via MalaCards
Search SMCR2 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for SMCR2

genes like me logo Genes that share disorders with SMCR2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SMCR2 Gene

Publications for SMCR2 Gene

  1. Genes in a refined Smith-Magenis syndrome critical deletion interval on chromosome 17p11.2 and the syntenic region of the mouse. (PMID: 11997338) Bi W … Lupski JR (Genome research 2002) 2 3 58

Products for SMCR2 Gene

Sources for SMCR2 Gene

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