Aliases for SMC5-AS1 Gene

Subcategory (RNA class) for SMC5-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for SMC5-AS1 Gene

  • SMC5 Antisense RNA 1 (Head To Head) 2 3 5
  • SMC5-AS1 2 168
  • NONHSAG052523 92
  • HSALNG0071768 167
  • MAMDC2-AS2 3

External Ids for SMC5-AS1 Gene

Previous GeneCards Identifiers for SMC5-AS1 Gene

  • GC09M072809

Summaries for SMC5-AS1 Gene

GeneCards Summary for SMC5-AS1 Gene

SMC5-AS1 (SMC5 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SMC5-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SMC5-AS1 Gene

Genomics for SMC5-AS1 Gene

GeneHancer (GH) Regulatory Elements for SMC5-AS1 Gene

Promoters and enhancers for SMC5-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SMC5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SMC5-AS1 Gene

Genomic Locations for SMC5-AS1 Gene
chr9:70,193,997-70,258,874
(GRCh38/hg38)
Size:
64,878 bases
Orientation:
Minus strand
chr9:72,808,913-72,873,790
(GRCh37/hg19)
Size:
64,878 bases
Orientation:
Minus strand

Genomic View for SMC5-AS1 Gene

Genes around SMC5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMC5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMC5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMC5-AS1 Gene

Proteins for SMC5-AS1 Gene

Post-translational modifications for SMC5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMC5-AS1 Gene

Domains & Families for SMC5-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SMC5-AS1 Gene

Function for SMC5-AS1 Gene

Phenotypes From GWAS Catalog for SMC5-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMC5-AS1 Gene

Localization for SMC5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMC5-AS1 Gene

Pathways & Interactions for SMC5-AS1 Gene

PathCards logo

SuperPathways for SMC5-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SMC5-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SMC5-AS1 Gene

Drugs & Compounds for SMC5-AS1 Gene

No Compound Related Data Available

Transcripts for SMC5-AS1 Gene

mRNA/cDNA for SMC5-AS1 Gene

15 RNACentral transcripts :
1 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
3 LncBook transcripts :
11 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SMC5-AS1 Gene

No ASD Table

Relevant External Links for SMC5-AS1 Gene

GeneLoc Exon Structure for
SMC5-AS1

Expression for SMC5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SMC5-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SMC5-AS1

genes like me logo Genes that share expression patterns with SMC5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMC5-AS1 Gene

Orthologs for SMC5-AS1 Gene

Evolution for SMC5-AS1 Gene

ENSEMBL:
Gene Tree for SMC5-AS1 (if available)
TreeFam:
Gene Tree for SMC5-AS1 (if available)

No data available for Orthologs for SMC5-AS1 Gene

Paralogs for SMC5-AS1 Gene

No data available for Paralogs for SMC5-AS1 Gene

Variants for SMC5-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for SMC5-AS1 Gene

SNP ID Clinical significance and condition Chr 09 pos Variation AA Info Type
713716 Benign: not provided 70,218,559(-) G/A MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
778429 Benign: not provided 70,225,775(-) T/C MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT

Additional dbSNP identifiers (rs#s) for SMC5-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for SMC5-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2675457 CNV deletion 23128226
esv3620575 CNV loss 21293372
nsv1047862 CNV gain 25217958
nsv6555 CNV insertion 18451855
nsv831615 CNV gain 17160897
nsv972757 CNV duplication 23825009

Additional Variant Information for SMC5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMC5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SMC5-AS1 Gene

Disorders for SMC5-AS1 Gene

Additional Disease Information for SMC5-AS1

No disorders were found for SMC5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMC5-AS1 Gene

Publications for SMC5-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for SMC5-AS1 Gene

Sources for SMC5-AS1 Gene