SMC4P1 Gene (Pseudogene)

Structural Maintenance Of Chromosomes 4 Pseudogene 1

GC02P136546
GIFtS:
3
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Aliases for SMC4P1 Gene

Aliases for SMC4P1 Gene

  • Structural Maintenance Of Chromosomes 4 Pseudogene 1 2 3 5
  • SMC4P1 5

External Ids for SMC4P1 Gene

Summaries for SMC4P1 Gene

GeneCards Summary for SMC4P1 Gene

SMC4P1 (Structural Maintenance Of Chromosomes 4 Pseudogene 1) is a Pseudogene.

Additional gene information for SMC4P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SMC4P1 Gene

Genomics for SMC4P1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for SMC4P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH02J136517 Enhancer 0.3 Ensembl 11.8 -27.1 -27055 0.8 POLR2A SMC4P1 HSALNG0019114 piR-55194-204 THSD7B CXCR4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SMC4P1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SMC4P1 Gene

Latest Assembly
chr2:136,544,656-136,545,542
(GRCh38/hg38)
Size:
887 bases
Orientation:
Plus strand

Previous Assembly
chr2:137,302,226-137,303,109
(GRCh37/hg19 by Entrez Gene)
Size:
884 bases
Orientation:
Plus strand

chr2:137,302,282-137,303,112
(GRCh37/hg19 by Ensembl)
Size:
831 bases
Orientation:
Plus strand

Genomic View for SMC4P1 Gene

Genes around SMC4P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMC4P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMC4P1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SMC4P1 Gene

Proteins for SMC4P1 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for SMC4P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMC4P1 Gene

Domains & Families for SMC4P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SMC4P1 Gene

Function for SMC4P1 Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

Phenotypes From GWAS Catalog for SMC4P1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMC4P1 Gene

Localization for SMC4P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMC4P1 Gene

Pathways & Interactions for SMC4P1 Gene

PathCards logo

SuperPathways for SMC4P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SMC4P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SMC4P1 Gene

Drugs & Compounds for SMC4P1 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for SMC4P1 Gene

Products:

  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

mRNA/cDNA for SMC4P1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMC4P1 Gene

No ASD Table

Relevant External Links for SMC4P1 Gene

GeneLoc Exon Structure for
SMC4P1

Expression for SMC4P1 Gene

Products:

  1. Primer products for research
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMC4P1 Gene

Orthologs for SMC4P1 Gene

Evolution for SMC4P1 Gene

ENSEMBL:
Gene Tree for SMC4P1 (if available)
TreeFam:
Gene Tree for SMC4P1 (if available)

No data available for Orthologs for SMC4P1 Gene

Paralogs for SMC4P1 Gene

No data available for Paralogs for SMC4P1 Gene

Variants for SMC4P1 Gene

Additional Variant Information for SMC4P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMC4P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SMC4P1 Gene

Disorders for SMC4P1 Gene

No disorders were found for SMC4P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SMC4P1 Gene

Publications for SMC4P1 Gene

No publications were found for SMC4P1 Gene.

No data available for Mastermind for SMC4P1 Gene

Products for SMC4P1 Gene

Sources for SMC4P1 Gene