Aliases for SMC2-AS1 Gene

Subcategory (RNA class) for SMC2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for SMC2-AS1 Gene

  • SMC2 Antisense RNA 1 (Head To Head) 2 3 5
  • SMC2-AS1 2 5 165
  • NONHSAG053088.2 91
  • HSALNG0073384 164

External Ids for SMC2-AS1 Gene

Summaries for SMC2-AS1 Gene

GeneCards Summary for SMC2-AS1 Gene

SMC2-AS1 (SMC2 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with SMC2-AS1 include Bladder Urothelial Carcinoma.

Additional gene information for SMC2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SMC2-AS1 Gene

Genomics for SMC2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SMC2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J104091 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 +0.3 258 5.3 CREB1 GATAD2A PRDM10 ZNF629 REST ZNF692 POLR2A LARP7 GABPA PRDM1 SMC2 SMC2-AS1 piR-38351-496
GH09J105067 Enhancer 0.6 ENCODE dbSUPER 11.2 -974.0 -974044 1.1 ZNF112 HLF MAX FKTN RALGAPA1P1 SMC2-AS1 lnc-ABCA1-10 LOC105376197 RF00017-7783 MN298678-148 ABCA1 SLC44A1 ENSG00000286536
GH09J105040 Enhancer 0.3 Ensembl 5.1 -946.8 -946814 1.6 HLF CT70 SMC2-AS1 RF00017-7784 lnc-ABCA1-10 RF00017-7783 ABCA1 MN298678-148 ENSG00000286536 SLC44A1
GH09J104081 Enhancer 0.3 Ensembl 0.4 +11.6 11586 1.2 SPI1 piR-38351-496 SMC2 SMC2-AS1 LOC101928523
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SMC2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SMC2-AS1 Gene

Genomic Locations for SMC2-AS1 Gene
chr9:104,077,307-104,093,987
(GRCh38/hg38)
Size:
16,681 bases
Orientation:
Minus strand
chr9:106,842,305-106,855,354
(GRCh37/hg19)
Size:
13,050 bases
Orientation:
Minus strand

Genomic View for SMC2-AS1 Gene

Genes around SMC2-AS1 on UCSC Golden Path with GeneCards custom track
SMC2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SMC2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMC2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMC2-AS1 Gene

Proteins for SMC2-AS1 Gene

Post-translational modifications for SMC2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMC2-AS1 Gene

Domains & Families for SMC2-AS1 Gene

Gene Families for SMC2-AS1 Gene

genes like me logo Genes that share domains with SMC2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SMC2-AS1 Gene

Function for SMC2-AS1 Gene

Phenotypes From GWAS Catalog for SMC2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMC2-AS1 Gene

Localization for SMC2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMC2-AS1 Gene

Pathways & Interactions for SMC2-AS1 Gene

PathCards logo

SuperPathways for SMC2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SMC2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SMC2-AS1 Gene

Drugs & Compounds for SMC2-AS1 Gene

No Compound Related Data Available

Transcripts for SMC2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SMC2-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003E9E7E_9606 lncRNA 7020 6

HGNC: 50827,

RefSeq: NR_121580,

Ensembl: ENST00000603487 (view in UCSC) ,

LncBook: HSALNT0153348,

LNCipedia: SMC2-AS1:2,

NONCODE: NONHSAT133788.2,

URS0000069CF8_9606 lncRNA 672 4

Ensembl: ENST00000603949 (view in UCSC) ,

LncBook: HSALNT0153353,

LNCipedia: SMC2-AS1:1,

NONCODE: NONHSAT133790.2,

URS0000EF5C50_9606 lncRNA 2427 1

Ensembl: ENST00000664068 (view in UCSC) ,

URS00009C3A2B_9606 lncRNA 7020 2

LncBook: HSALNT0153350,

NONCODE: NONHSAT221124.1,

URS0000D5BAAC_9606 lncRNA 3903 2

LncBook: HSALNT0153351,

LNCipedia: SMC2-AS1:13,

SMC2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SMC2-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SMC2-AS1 Gene

No ASD Table

Relevant External Links for SMC2-AS1 Gene

GeneLoc Exon Structure for
SMC2-AS1

Expression for SMC2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SMC2-AS1 Gene

genes like me logo Genes that share expression patterns with SMC2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMC2-AS1 Gene

Orthologs for SMC2-AS1 Gene

Evolution for SMC2-AS1 Gene

ENSEMBL:
Gene Tree for SMC2-AS1 (if available)
TreeFam:
Gene Tree for SMC2-AS1 (if available)

No data available for Orthologs for SMC2-AS1 Gene

Paralogs for SMC2-AS1 Gene

No data available for Paralogs for SMC2-AS1 Gene

Variants for SMC2-AS1 Gene

Additional dbSNP identifiers (rs#s) for SMC2-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for SMC2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv7695n100 CNV loss 25217958
esv2761294 CNV loss 21179565
esv3621328 CNV loss 21293372
nsv1045887 CNV loss 25217958
nsv516897 CNV loss 19592680
nsv615049 CNV gain 21841781
nsv615064 CNV gain 21841781
nsv818715 CNV loss 17921354
nsv831676 CNV gain 17160897

Additional Variant Information for SMC2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMC2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SMC2-AS1 Gene

Disorders for SMC2-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SMC2-AS1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
bladder urothelial carcinoma
  • bladder transitional cell carcinoma
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with SMC2-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SMC2-AS1 Gene

Publications for SMC2-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for SMC2-AS1 Gene

Sources for SMC2-AS1 Gene