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Aliases for SMARCE1P6 Gene
Aliases for SMARCE1P6 Gene
External Ids for SMARCE1P6 Gene
- HGNC: 39737
- Entrez Gene: 646196
- Ensembl: ENSG00000214465
Previous GeneCards Identifiers for SMARCE1P6 Gene
- GC02P026374
Summaries for SMARCE1P6 Gene
GeneCards Summary for SMARCE1P6 Gene
SMARCE1P6 (SWI/SNF Related, Matrix Associated, Actin Dependent Regulator Of Chromatin, Subfamily E, Member 1 Pseudogene 6) is a Pseudogene.
Additional gene information for SMARCE1P6 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SMARCE1P6 Gene
Genomics for SMARCE1P6 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for SMARCE1P6 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH02J026631 | Enhancer | 0.8 | Ensembl ENCODE | 5.3 | +481.9 | 481887 | 0.8 | TEAD4 FOXA1 FOXK2 SP1 CTBP1 FOXA2 PKNOX1 TEAD1 FOSL2 BCOR | SMARCE1P6 RF00017-3142 CIB4 FAM166C | |
| GH02J026143 | Enhancer | 0.9 | Ensembl ENCODE | 0.7 | -4.6 | -4570 | 1.9 | CTCF ZIC2 REST NR2C1 RAD21 BRD9 TRIM22 HDAC1 SOX6 ZBTB44 | RNU6-942P KIF3C RAB10 HADHB HADHA GAREM2 SMARCE1P6 piR-50437-362 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around SMARCE1P6 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for SMARCE1P6 Gene
Genomic Locations for SMARCE1P6 Gene
- chr2:26,149,114-26,151,272
- (GRCh38/hg38)
- Size:
- 2,159 bases
- Orientation:
- Plus strand
- chr2:26,371,961-26,374,141
- (GRCh37/hg19)
- Size:
- 2,181 bases
- Orientation:
- Plus strand
Genomic View for SMARCE1P6 Gene
Genes around SMARCE1P6 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 2p23.3 by HGNC
- 2p23.3 by Entrez Gene
- 2p23.3 by Ensembl
SMARCE1P6 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SMARCE1P6 Gene
Proteins for SMARCE1P6 Gene
Post-translational modifications for SMARCE1P6 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SMARCE1P6
- Origene Custom Protein Services for SMARCE1P6
No data available for DME Specific Peptides for SMARCE1P6 Gene
Domains & Families for SMARCE1P6 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SMARCE1P6 Gene
Function for SMARCE1P6 Gene
Phenotypes From GWAS Catalog for SMARCE1P6 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for SMARCE1P6 - Select products 50% OFF >
- * SMARCE1P6 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for SMARCE1P6
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for SMARCE1P6 - Select products 50% OFF >
- * SMARCE1P6 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMARCE1P6 Gene
Localization for SMARCE1P6 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMARCE1P6 Gene
Transcripts for SMARCE1P6 Gene
mRNA/cDNA for SMARCE1P6 Gene
- 1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000398372 1216 nts (view in UCSC)
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for SMARCE1P6 - Select products 50% OFF >
- * SMARCE1P6 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for SMARCE1P6
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for SMARCE1P6 - Select products 50% OFF >
- * SMARCE1P6 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
Relevant External Links for SMARCE1P6 Gene
- GeneLoc Exon Structure for
- SMARCE1P6
Expression for SMARCE1P6 Gene
mRNA differential expression in normal tissues according to GTEx for SMARCE1P6 Gene
This gene is overexpressed in Esophagus - Mucosa (x5.2).
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMARCE1P6 Gene
Orthologs for SMARCE1P6 Gene
No data available for Orthologs for SMARCE1P6 Gene
Paralogs for SMARCE1P6 Gene
No data available for Paralogs for SMARCE1P6 Gene
Variants for SMARCE1P6 Gene
Additional Variant Information for SMARCE1P6 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SMARCE1P6
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SMARCE1P6 Gene
Disorders for SMARCE1P6 Gene
No disorders were found for SMARCE1P6 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SMARCE1P6 Gene
Publications for SMARCE1P6 Gene
No publications were found for SMARCE1P6 Gene.
No data available for Mastermind for SMARCE1P6 Gene
Products for SMARCE1P6 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SMARCE1P6
- Origene Custom Protein Services for SMARCE1P6
- Browse OriGene Inhibitory RNA Products For SMARCE1P6
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for SMARCE1P6
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SMARCE1P6
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SMARCE1P6
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for SMARCE1P6
- Search GeneCopoeia for miRNA 3'UTR Target clone products for SMARCE1P6
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for SMARCE1P6
Sources for SMARCE1P6 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB