Aliases for SMARCE1P6 Gene

Aliases for SMARCE1P6 Gene

  • SWI/SNF Related, Matrix Associated, Actin Dependent Regulator Of Chromatin, Subfamily E, Member 1 Pseudogene 6 2 3 5
  • SMARCE1P6 5

External Ids for SMARCE1P6 Gene

Previous GeneCards Identifiers for SMARCE1P6 Gene

  • GC02P026374

Summaries for SMARCE1P6 Gene

GeneCards Summary for SMARCE1P6 Gene

SMARCE1P6 (SWI/SNF Related, Matrix Associated, Actin Dependent Regulator Of Chromatin, Subfamily E, Member 1 Pseudogene 6) is a Pseudogene.

Additional gene information for SMARCE1P6 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SMARCE1P6 Gene

Genomics for SMARCE1P6 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SMARCE1P6 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J026631 Enhancer 0.8 Ensembl ENCODE 5.3 +481.9 481887 0.8 TEAD4 FOXA1 FOXK2 SP1 CTBP1 FOXA2 PKNOX1 TEAD1 FOSL2 BCOR SMARCE1P6 RF00017-3142 CIB4 FAM166C
GH02J026143 Enhancer 0.9 Ensembl ENCODE 0.7 -4.6 -4570 1.9 CTCF ZIC2 REST NR2C1 RAD21 BRD9 TRIM22 HDAC1 SOX6 ZBTB44 RNU6-942P KIF3C RAB10 HADHB HADHA GAREM2 SMARCE1P6 piR-50437-362
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SMARCE1P6 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SMARCE1P6 Gene

Genomic Locations for SMARCE1P6 Gene
chr2:26,149,114-26,151,272
(GRCh38/hg38)
Size:
2,159 bases
Orientation:
Plus strand
chr2:26,371,961-26,374,141
(GRCh37/hg19)
Size:
2,181 bases
Orientation:
Plus strand

Genomic View for SMARCE1P6 Gene

Genes around SMARCE1P6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMARCE1P6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMARCE1P6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMARCE1P6 Gene

Proteins for SMARCE1P6 Gene

Post-translational modifications for SMARCE1P6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMARCE1P6 Gene

Domains & Families for SMARCE1P6 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SMARCE1P6 Gene

Function for SMARCE1P6 Gene

Phenotypes From GWAS Catalog for SMARCE1P6 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMARCE1P6 Gene

Localization for SMARCE1P6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMARCE1P6 Gene

Pathways & Interactions for SMARCE1P6 Gene

PathCards logo

SuperPathways for SMARCE1P6 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SMARCE1P6 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SMARCE1P6 Gene

Drugs & Compounds for SMARCE1P6 Gene

No Compound Related Data Available

Transcripts for SMARCE1P6 Gene

mRNA/cDNA for SMARCE1P6 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SMARCE1P6 Gene

No ASD Table

Relevant External Links for SMARCE1P6 Gene

GeneLoc Exon Structure for
SMARCE1P6

Expression for SMARCE1P6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SMARCE1P6 Gene

mRNA differential expression in normal tissues according to GTEx for SMARCE1P6 Gene

This gene is overexpressed in Esophagus - Mucosa (x5.2).
genes like me logo Genes that share expression patterns with SMARCE1P6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMARCE1P6 Gene

Orthologs for SMARCE1P6 Gene

Evolution for SMARCE1P6 Gene

ENSEMBL:
Gene Tree for SMARCE1P6 (if available)
TreeFam:
Gene Tree for SMARCE1P6 (if available)

No data available for Orthologs for SMARCE1P6 Gene

Paralogs for SMARCE1P6 Gene

No data available for Paralogs for SMARCE1P6 Gene

Variants for SMARCE1P6 Gene

Additional Variant Information for SMARCE1P6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMARCE1P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SMARCE1P6 Gene

Disorders for SMARCE1P6 Gene

No disorders were found for SMARCE1P6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SMARCE1P6 Gene

Publications for SMARCE1P6 Gene

No publications were found for SMARCE1P6 Gene.

No data available for Mastermind for SMARCE1P6 Gene

Products for SMARCE1P6 Gene

Sources for SMARCE1P6 Gene