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Aliases for SMAD9-IT1 Gene

Subcategory (RNA class) for SMAD9-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SMAD9-IT1 Gene

  • SMAD9 Intronic Transcript 1 2 3 5
  • SMAD9 Antisense RNA 1 (Non-Protein Coding) 2 3
  • SMAD9 Antisense RNA 1 2
  • SMAD9-AS1 3

External Ids for SMAD9-IT1 Gene

Previous HGNC Symbols for SMAD9-IT1 Gene

  • SMAD9-AS1

Summaries for SMAD9-IT1 Gene

GeneCards Summary for SMAD9-IT1 Gene

SMAD9-IT1 (SMAD9 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SMAD9-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMAD9-IT1 Gene

Genomics for SMAD9-IT1 Gene

GeneHancer (GH) Regulatory Elements for SMAD9-IT1 Gene

Promoters and enhancers for SMAD9-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I036918 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE 0.2 -69.8 -69844 3.2 FOXA2 ARID4B ZNF48 ZNF335 GLIS2 CREM EGR2 SP5 MXD4 ZNF398 SMAD9 SERTM1 RFXAP SMAD9-IT1
GH13I036858 Enhancer 0.6 ENCODE 0.4 -8.4 -8393 0.1 CTCF PKNOX1 ZNF654 REST RAD21 CEBPA SMC3 ZNF143 RXRB SMAD9-IT1 SMAD9
GH13I036887 Enhancer 0.4 ENCODE 0.3 -38.0 -37953 0.2 MZF1 MLLT1 EGR2 SMAD9 SMAD9-IT1
GH13I036905 Promoter 0.5 EPDnew 0.2 -55.8 -55763 0.1 SMAD9 SMAD9-IT1
GH13I036899 Enhancer 0.2 FANTOM5 0.2 -49.9 -49853 0.2 SMAD9 SERTM1 SMAD9-IT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SMAD9-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SMAD9-IT1 Gene

Genomic Locations for SMAD9-IT1 Gene
chr13:36,849,366-36,850,046
(GRCh38/hg38)
Size:
681 bases
Orientation:
Minus strand
chr13:37,423,503-37,424,183
(GRCh37/hg19)

Genomic View for SMAD9-IT1 Gene

Genes around SMAD9-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMAD9-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMAD9-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SMAD9-IT1 Gene

Proteins for SMAD9-IT1 Gene

Post-translational modifications for SMAD9-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMAD9-IT1 Gene

Domains & Families for SMAD9-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMAD9-IT1 Gene

Function for SMAD9-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMAD9-IT1 Gene

Localization for SMAD9-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMAD9-IT1 Gene

Pathways & Interactions for SMAD9-IT1 Gene

SuperPathways for SMAD9-IT1 Gene

No Data Available

Interacting Proteins for SMAD9-IT1 Gene

Gene Ontology (GO) - Biological Process for SMAD9-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMAD9-IT1 Gene

Drugs & Compounds for SMAD9-IT1 Gene

No Compound Related Data Available

Transcripts for SMAD9-IT1 Gene

mRNA/cDNA for SMAD9-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SMAD9-IT1 Gene

No ASD Table

Relevant External Links for SMAD9-IT1 Gene

GeneLoc Exon Structure for
SMAD9-IT1
ECgene alternative splicing isoforms for
SMAD9-IT1

Expression for SMAD9-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SMAD9-IT1 Gene

genes like me logo Genes that share expression patterns with SMAD9-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMAD9-IT1 Gene

Orthologs for SMAD9-IT1 Gene

Evolution for SMAD9-IT1 Gene

ENSEMBL:
Gene Tree for SMAD9-IT1 (if available)
TreeFam:
Gene Tree for SMAD9-IT1 (if available)

No data available for Orthologs for SMAD9-IT1 Gene

Paralogs for SMAD9-IT1 Gene

No data available for Paralogs for SMAD9-IT1 Gene

Variants for SMAD9-IT1 Gene

Additional Variant Information for SMAD9-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMAD9-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SMAD9-IT1 Gene

Disorders for SMAD9-IT1 Gene

No disorders were found for SMAD9-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SMAD9-IT1 Gene

Publications for SMAD9-IT1 Gene

No publications were found for SMAD9-IT1 Gene.

Products for SMAD9-IT1 Gene

Sources for SMAD9-IT1 Gene

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