Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SLIT2-IT1 Gene

Subcategory (RNA class) for SLIT2-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SLIT2-IT1 Gene

  • SLIT2 Intronic Transcript 1 2 3 5
  • SLIT2 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for SLIT2-IT1 Gene

Previous GeneCards Identifiers for SLIT2-IT1 Gene

  • GC04P020395
  • GC04P020396
  • GC04P020436
  • GC04P020470
  • GC04P020502

Summaries for SLIT2-IT1 Gene

GeneCards Summary for SLIT2-IT1 Gene

SLIT2-IT1 (SLIT2 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SLIT2-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLIT2-IT1 Gene

Genomics for SLIT2-IT1 Gene

GeneHancer (GH) Regulatory Elements for SLIT2-IT1 Gene

Promoters and enhancers for SLIT2-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I020418 Enhancer 0.9 Ensembl ENCODE 0.3 +26.8 26812 0.8 CTCF IRF2 RAD21 YY1 ZNF143 SMC3 SRF SMARCA5 ZNF654 CEBPB PACRGL SLIT2-IT1 GC04P020521 SLIT2
GH04I020429 Enhancer 0.7 Ensembl ENCODE 0.3 +38.8 38765 2.9 CTCF SCRT2 ZNF24 ATF2 EZH2 SLIT2-IT1 GC04P020521 SLIT2
GH04I020432 Enhancer 0.3 ENCODE 0.3 +41.2 41207 0.9 FOXA2 SLIT2-IT1 GC04P020521 SLIT2
GH04I020443 Enhancer 0.4 FANTOM5 0.2 +51.4 51441 0.1 ZNF362 GC04P020521 SLIT2-IT1 SLIT2
GH04I020339 Enhancer 0.4 FANTOM5 0.2 -53.0 -52964 0.3 ZNF362 ZNF384 GC04P020520 SLIT2-IT1 SLIT2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SLIT2-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SLIT2-IT1 Gene

Genomic Locations for SLIT2-IT1 Gene
chr4:20,392,189-20,394,856
(GRCh38/hg38)
Size:
2,668 bases
Orientation:
Plus strand
chr4:20,393,812-20,396,479
(GRCh37/hg19)

Genomic View for SLIT2-IT1 Gene

Genes around SLIT2-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLIT2-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLIT2-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLIT2-IT1 Gene

Proteins for SLIT2-IT1 Gene

Post-translational modifications for SLIT2-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLIT2-IT1 Gene

Domains & Families for SLIT2-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SLIT2-IT1 Gene

Function for SLIT2-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLIT2-IT1 Gene

Localization for SLIT2-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLIT2-IT1 Gene

Pathways & Interactions for SLIT2-IT1 Gene

SuperPathways for SLIT2-IT1 Gene

No Data Available

Interacting Proteins for SLIT2-IT1 Gene

Gene Ontology (GO) - Biological Process for SLIT2-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLIT2-IT1 Gene

Drugs & Compounds for SLIT2-IT1 Gene

No Compound Related Data Available

Transcripts for SLIT2-IT1 Gene

mRNA/cDNA for SLIT2-IT1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SLIT2-IT1 Gene

SLIT2 intronic transcript 1 (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SLIT2-IT1 Gene

No ASD Table

Relevant External Links for SLIT2-IT1 Gene

GeneLoc Exon Structure for
SLIT2-IT1
ECgene alternative splicing isoforms for
SLIT2-IT1

Expression for SLIT2-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SLIT2-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for SLIT2-IT1 Gene

This gene is overexpressed in Testis (x49.4).

SOURCE GeneReport for Unigene cluster for SLIT2-IT1 Gene:

Hs.665305
genes like me logo Genes that share expression patterns with SLIT2-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLIT2-IT1 Gene

Orthologs for SLIT2-IT1 Gene

Evolution for SLIT2-IT1 Gene

ENSEMBL:
Gene Tree for SLIT2-IT1 (if available)
TreeFam:
Gene Tree for SLIT2-IT1 (if available)

No data available for Orthologs for SLIT2-IT1 Gene

Paralogs for SLIT2-IT1 Gene

No data available for Paralogs for SLIT2-IT1 Gene

Variants for SLIT2-IT1 Gene

Sequence variations from dbSNP and Humsavar for SLIT2-IT1 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs10000297 -- 20,390,284(+) T/A upstream_transcript_variant
rs1000600316 -- 20,395,074(+) G/A downstream_transcript_variant
rs1000624326 -- 20,392,645(+) T/C intron_variant
rs1001815910 -- 20,391,128(+) C/T upstream_transcript_variant
rs1001888113 -- 20,391,649(+) C/A/G upstream_transcript_variant

Additional Variant Information for SLIT2-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLIT2-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SLIT2-IT1 Gene

Disorders for SLIT2-IT1 Gene

Additional Disease Information for SLIT2-IT1

No disorders were found for SLIT2-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLIT2-IT1 Gene

Publications for SLIT2-IT1 Gene

  1. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58

Products for SLIT2-IT1 Gene

Sources for SLIT2-IT1 Gene

Content
Loading form....