Aliases for SLIT1-AS1 Gene

Subcategory (RNA class) for SLIT1-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for SLIT1-AS1 Gene

  • SLIT1 Antisense RNA 1 2 3 5
  • SLIT1-AS1 2 170
  • NONHSAG006622 94
  • HSALNG0079921 169

External Ids for SLIT1-AS1 Gene

Summaries for SLIT1-AS1 Gene

GeneCards Summary for SLIT1-AS1 Gene

SLIT1-AS1 (SLIT1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SLIT1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SLIT1-AS1 Gene

Genomics for SLIT1-AS1 Gene

GeneHancer (GH) Regulatory Elements for SLIT1-AS1 Gene

Promoters and enhancers for SLIT1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J097103 Enhancer 0.3 Ensembl CraniofacialAtlas 756.2 +0.4 446 0.4 SLIT1-AS1 LOC105378444 lnc-ARHGAP19-SLIT1-4 RF00017-761 SLIT1
GH10J097681 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10 +583.9 583863 9.4 SIN3A SP1 CTCF ZBTB6 FOXA1 MLX RBPJ POLR2A USF2 NR2F6 AVPI1 MARVELD1 LOXL4 MORN4 R3HCC1L HPS1 MMS19 ZFYVE27 RPL13AP5 ENSG00000230928
GH10J097497 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 10 +396.4 396446 5.2 ZNF785 SIN3A SP1 ZBTB40 ZBTB6 MLX RBPJ POLR2A USF2 HCFC1 MMS19 UBTD1 R3HCC1L HPS1 MARVELD1 LOXL4 NPM1P26 ZDHHC16 RPL13AP5 SLIT1-AS1
GH10J096128 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 10 -972.2 -972159 3.6 ZNF785 SIN3A SP1 ZBTB40 ZBTB6 LCORL RBPJ POLR2A ATF1 CREB1 ZNF518A ENSG00000287009 lnc-CCNJ-1 lnc-BLNK-4 CCNJ NPM1P26 RPL13AP5 TCTN3 LCOR ENTPD1-AS1
GH10J096716 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10 -383.7 -383700 5.4 ZNF24 CTCF MYC ETV6 MAX RAD21 HDGF ZNF652 BCL6B NKRF PIK3AP1 SLIT1-AS1 LCOR TM9SF3 RF00017-758
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SLIT1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SLIT1-AS1 Gene

Genomic Locations for SLIT1-AS1 Gene
chr10:97,102,755-97,104,355
(GRCh38/hg38)
Size:
1,601 bases
Orientation:
Plus strand
chr10:98,862,513-98,863,504
(GRCh37/hg19)
Size:
992 bases
Orientation:
Plus strand

Genomic View for SLIT1-AS1 Gene

Genes around SLIT1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLIT1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLIT1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLIT1-AS1 Gene

Proteins for SLIT1-AS1 Gene

Post-translational modifications for SLIT1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLIT1-AS1 Gene

Domains & Families for SLIT1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SLIT1-AS1 Gene

Function for SLIT1-AS1 Gene

Phenotypes From GWAS Catalog for SLIT1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLIT1-AS1 Gene

Localization for SLIT1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLIT1-AS1 Gene

Pathways & Interactions for SLIT1-AS1 Gene

PathCards logo

SuperPathways for SLIT1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SLIT1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLIT1-AS1 Gene

Drugs & Compounds for SLIT1-AS1 Gene

No Compound Related Data Available

Transcripts for SLIT1-AS1 Gene

mRNA/cDNA for SLIT1-AS1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) NONCODE transcripts :
(3) RNACentral transcripts :
(2) LncBook transcripts :
(2) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SLIT1-AS1 Gene

No ASD Table

Relevant External Links for SLIT1-AS1 Gene

GeneLoc Exon Structure for
SLIT1-AS1
ECgene alternative splicing isoforms for
SLIT1-AS1

Expression for SLIT1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SLIT1-AS1 Gene

genes like me logo Genes that share expression patterns with SLIT1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLIT1-AS1 Gene

Orthologs for SLIT1-AS1 Gene

Evolution for SLIT1-AS1 Gene

ENSEMBL:
Gene Tree for SLIT1-AS1 (if available)
TreeFam:
Gene Tree for SLIT1-AS1 (if available)

No data available for Orthologs for SLIT1-AS1 Gene

Paralogs for SLIT1-AS1 Gene

No data available for Paralogs for SLIT1-AS1 Gene

Variants for SLIT1-AS1 Gene

Sequence variations from dbSNP and Humsavar for SLIT1-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000533969 -- 97,104,080(+) A/C/G/T downstream_transcript_variant
rs1001796268 -- 97,103,083(+) G/A non_coding_transcript_variant
rs1001827520 -- 97,103,466(+) T/C/G non_coding_transcript_variant
rs1002046486 -- 97,103,829(+) C/T downstream_transcript_variant
rs1003469592 -- 97,102,436(+) /G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SLIT1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv963n100 CNV gain 25217958
esv2759777 CNV loss 17122850
nsv1110852 OTHER inversion 24896259

Additional Variant Information for SLIT1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLIT1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SLIT1-AS1 Gene

Disorders for SLIT1-AS1 Gene

Additional Disease Information for SLIT1-AS1

No disorders were found for SLIT1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLIT1-AS1 Gene

Publications for SLIT1-AS1 Gene

  1. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) Oláh J … Ovádi J (The Journal of biological chemistry 2011) 3 56
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

No data available for External Links for SLIT1-AS1 Gene

Products for SLIT1-AS1 Gene

Sources for SLIT1-AS1 Gene