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Aliases for SLFNL1-AS1 Gene

Subcategory (RNA class) for SLFNL1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SLFNL1-AS1 Gene

  • SLFNL1 Antisense RNA 1 2 3 5
  • SLFNL1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SLFNL1-AS1 Gene

Previous GeneCards Identifiers for SLFNL1-AS1 Gene

  • GC01P041482

Summaries for SLFNL1-AS1 Gene

GeneCards Summary for SLFNL1-AS1 Gene

SLFNL1-AS1 (SLFNL1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SLFNL1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLFNL1-AS1 Gene

Genomics for SLFNL1-AS1 Gene

GeneHancer (GH) Regulatory Elements for SLFNL1-AS1 Gene

Promoters and enhancers for SLFNL1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I041013 Enhancer 0.7 Ensembl ENCODE 550.8 +0.3 335 2.4 KLF1 POLR2A ZNF189 JUN KLF9 ZNF600 ZBTB33 SLFNL1-AS1 ENSG00000235358 FOXO6 SLFNL1 SCMH1 CTPS1
GH01I041021 Promoter 0.8 EPDnew 0.4 +7.2 7155 0.1 ZFP69B RXRA ZBTB48 POLR2A SCRT2 KLF9 NR2F2 SLFNL1 SLFNL1-AS1
GH01I041023 Promoter 0.6 EPDnew 0.4 +8.7 8672 0.1 CTCF SLFNL1 FOXO6 SLFNL1-AS1
GH01I041035 Enhancer 0.2 FANTOM5 0.3 +21.3 21345 0.3 CTPS1 SLFNL1 SLFNL1-AS1 RPL23AP17 SCMH1
GH01I041036 Enhancer 0.2 FANTOM5 0.3 +21.7 21692 0.1 SCMH1 SLFNL1 SLFNL1-AS1 RPL23AP17
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SLFNL1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SLFNL1-AS1 Gene

Genomic Locations for SLFNL1-AS1 Gene
chr1:41,014,590-41,043,890
(GRCh38/hg38)
Size:
29,301 bases
Orientation:
Plus strand
chr1:41,480,262-41,509,562
(GRCh37/hg19)

Genomic View for SLFNL1-AS1 Gene

Genes around SLFNL1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLFNL1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLFNL1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLFNL1-AS1 Gene

Proteins for SLFNL1-AS1 Gene

Post-translational modifications for SLFNL1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLFNL1-AS1 Gene

Domains & Families for SLFNL1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SLFNL1-AS1 Gene

Function for SLFNL1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLFNL1-AS1 Gene

Localization for SLFNL1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLFNL1-AS1 Gene

Pathways & Interactions for SLFNL1-AS1 Gene

SuperPathways for SLFNL1-AS1 Gene

No Data Available

Interacting Proteins for SLFNL1-AS1 Gene

Gene Ontology (GO) - Biological Process for SLFNL1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLFNL1-AS1 Gene

Drugs & Compounds for SLFNL1-AS1 Gene

No Compound Related Data Available

Transcripts for SLFNL1-AS1 Gene

mRNA/cDNA for SLFNL1-AS1 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SLFNL1-AS1 Gene

SLFNL1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SLFNL1-AS1 Gene

No ASD Table

Relevant External Links for SLFNL1-AS1 Gene

GeneLoc Exon Structure for
SLFNL1-AS1
ECgene alternative splicing isoforms for
SLFNL1-AS1

Expression for SLFNL1-AS1 Gene

SOURCE GeneReport for Unigene cluster for SLFNL1-AS1 Gene:

Hs.660056
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLFNL1-AS1 Gene

Orthologs for SLFNL1-AS1 Gene

Evolution for SLFNL1-AS1 Gene

ENSEMBL:
Gene Tree for SLFNL1-AS1 (if available)
TreeFam:
Gene Tree for SLFNL1-AS1 (if available)

No data available for Orthologs for SLFNL1-AS1 Gene

Paralogs for SLFNL1-AS1 Gene

No data available for Paralogs for SLFNL1-AS1 Gene

Variants for SLFNL1-AS1 Gene

Sequence variations from dbSNP and Humsavar for SLFNL1-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000048207 -- 41,039,760(+) A/C intron_variant
rs1000168038 -- 41,021,273(+) C/A intron_variant
rs1000171195 -- 41,033,605(+) G/T intron_variant
rs1000234533 -- 41,026,349(+) T/G intron_variant
rs1000288581 -- 41,026,647(+) G/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SLFNL1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3304788 CNV mobile element insertion 20981092
esv3332583 CNV insertion 20981092
esv3427723 CNV insertion 20981092
nsv546103 CNV loss 21841781

Additional Variant Information for SLFNL1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLFNL1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SLFNL1-AS1 Gene

Disorders for SLFNL1-AS1 Gene

Additional Disease Information for SLFNL1-AS1

No disorders were found for SLFNL1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLFNL1-AS1 Gene

Publications for SLFNL1-AS1 Gene

No publications were found for SLFNL1-AS1 Gene.

Products for SLFNL1-AS1 Gene

Sources for SLFNL1-AS1 Gene

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