Aliases for SLFNL1-AS1 Gene

Subcategory (RNA class) for SLFNL1-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for SLFNL1-AS1 Gene

  • SLFNL1 Antisense RNA 1 2 3 5
  • SLFNL1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • SLFNL1-AS1 2 5
  • NONHSAG001180.2 91
  • HSALNG0002928 164

External Ids for SLFNL1-AS1 Gene

Previous GeneCards Identifiers for SLFNL1-AS1 Gene

  • GC01P041482

Summaries for SLFNL1-AS1 Gene

GeneCards Summary for SLFNL1-AS1 Gene

SLFNL1-AS1 (SLFNL1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SLFNL1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SLFNL1-AS1 Gene

Genomics for SLFNL1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SLFNL1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J041013 Enhancer 0.7 Ensembl ENCODE 600.7 -0.2 -237 3.5 POLR2A ZNF600 KLF9 NFIC ZNF189 JUN ZBTB33 KLF1 ZNF121 SLFNL1-AS1 ENSG00000235358 FOXO6 SLFNL1 SCMH1 CTPS1 HSALNG0002922
GH01J041021 Promoter/Enhancer 1.2 EPDnew Ensembl CraniofacialAtlas 0.4 +6.7 6711 2.2 ZNF692 POLR2A ZIC2 HNRNPUL1 SMAD5 SCRT2 KLF9 CTCF USF1 ZNF266 SLFNL1 piR-47914 ENSG00000235358 NFYC RLF EXO5 FOXO6 CTPS1 SLFNL1-AS1
GH01J041006 Enhancer 0.6 Ensembl ENCODE 0.4 -7.1 -7129 2 MAFK MEIS2 POLR2A HSALNG0002922 CTPS1 SLFNL1-AS1 SLFNL1
GH01J041044 Enhancer 0.8 Ensembl ENCODE 0.3 +30.8 30811 4.8 FOXA1 SP1 POLR2A JUND NR2F2 ESR1 GATA3 RAD21 HNF4A RXRA lnc-SLFNL1-2 FOXO6 SLFNL1 MIR30C1 MIR30E NFYC CTPS1 SCMH1 hsa-miR-5095-015 SLFNL1-AS1
GH01J041023 Enhancer 0.5 Ensembl 0.4 +10.4 10411 3.2 CTCF POLR2A RBM22 RAD21 TAF1 MZF1 BCL3 SLFNL1 FOXO6 ENSG00000235358 CTPS1 hsa-miR-5095-015 SLFNL1-AS1 SCMH1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SLFNL1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SLFNL1-AS1 Gene

Genomic Locations for SLFNL1-AS1 Gene
chr1:41,014,590-41,059,477
(GRCh38/hg38)
Size:
44,888 bases
Orientation:
Plus strand
chr1:41,480,262-41,509,562
(GRCh37/hg19)
Size:
29,301 bases
Orientation:
Plus strand

Genomic View for SLFNL1-AS1 Gene

Genes around SLFNL1-AS1 on UCSC Golden Path with GeneCards custom track
SLFNL1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SLFNL1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLFNL1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLFNL1-AS1 Gene

Proteins for SLFNL1-AS1 Gene

Post-translational modifications for SLFNL1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLFNL1-AS1 Gene

Domains & Families for SLFNL1-AS1 Gene

Gene Families for SLFNL1-AS1 Gene

genes like me logo Genes that share domains with SLFNL1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SLFNL1-AS1 Gene

Function for SLFNL1-AS1 Gene

Phenotypes From GWAS Catalog for SLFNL1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLFNL1-AS1 Gene

Localization for SLFNL1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLFNL1-AS1 Gene

Pathways & Interactions for SLFNL1-AS1 Gene

PathCards logo

SuperPathways for SLFNL1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SLFNL1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SLFNL1-AS1 Gene

Drugs & Compounds for SLFNL1-AS1 Gene

No Compound Related Data Available

Transcripts for SLFNL1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SLFNL1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075B9EA_9606 lncRNA 4800 4

HGNC: 44126,

RefSeq: NR_037868,

Ensembl: ENST00000626479 (view in UCSC) ,

NONCODE: NONHSAT002679.2,

URS00009B6798_9606 lncRNA 305 2

LncBook: HSALNT0005579,

NONCODE: NONHSAT148806.1,

SLFNL1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SLFNL1-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SLFNL1-AS1 Gene

No ASD Table

Relevant External Links for SLFNL1-AS1 Gene

GeneLoc Exon Structure for
SLFNL1-AS1

Expression for SLFNL1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SLFNL1-AS1

SOURCE GeneReport for Unigene cluster for SLFNL1-AS1 Gene:

Hs.660056
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLFNL1-AS1 Gene

Orthologs for SLFNL1-AS1 Gene

Evolution for SLFNL1-AS1 Gene

ENSEMBL:
Gene Tree for SLFNL1-AS1 (if available)
TreeFam:
Gene Tree for SLFNL1-AS1 (if available)

No data available for Orthologs for SLFNL1-AS1 Gene

Paralogs for SLFNL1-AS1 Gene

No data available for Paralogs for SLFNL1-AS1 Gene

Variants for SLFNL1-AS1 Gene

Additional dbSNP identifiers (rs#s) for SLFNL1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for SLFNL1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3304788 CNV mobile element insertion 20981092
esv3332583 CNV insertion 20981092
esv3427723 CNV insertion 20981092
nsv546103 CNV loss 21841781

Additional Variant Information for SLFNL1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLFNL1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SLFNL1-AS1 Gene

Disorders for SLFNL1-AS1 Gene

No disorders were found for SLFNL1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLFNL1-AS1 Gene

Publications for SLFNL1-AS1 Gene

No publications were found for SLFNL1-AS1 Gene.

Products for SLFNL1-AS1 Gene

Sources for SLFNL1-AS1 Gene