Aliases for SLC9A7P1 Gene

Aliases for SLC9A7P1 Gene

  • Solute Carrier Family 9 Member 7 Pseudogene 1 2 3 5
  • Solute Carrier Family 9, Subfamily A (NHE7, Cation Proton Antiporter 7), Member 7 Pseudogene 1 2 3
  • Solute Carrier Family 9 (Sodium/Hydrogen Exchanger), Member 7 Pseudogene 1 2 3

External Ids for SLC9A7P1 Gene

Previous GeneCards Identifiers for SLC9A7P1 Gene

  • GC12M098847

Summaries for SLC9A7P1 Gene

GeneCards Summary for SLC9A7P1 Gene

SLC9A7P1 (Solute Carrier Family 9 Member 7 Pseudogene 1) is a Pseudogene.

Additional gene information for SLC9A7P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SLC9A7P1 Gene

Genomics for SLC9A7P1 Gene

GeneHancer (GH) Regulatory Elements for SLC9A7P1 Gene

Promoters and enhancers for SLC9A7P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J098456 Promoter/Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas 765.4 +0.1 139 1.2 ZNF362 L3MBTL2 NFIB EGR1 PRDM10 ATF1 KMT2B ZNF692 ZNF561 NRF1 SLC9A7P1 LINC02453 TMPO piR-57133-125
GH12J098463 Enhancer 1 FANTOM5 Ensembl ENCODE 24.7 -9.9 -9856 10 PRDM1 CEBPA ZNF512 CEBPB ZNF140 SCRT2 ZNF10 ZFHX2 BATF ZNF664 SLC9A7P1 LINC02453 TMPO RNU4-41P HSALNG0093378
GH12J098502 Promoter/Enhancer 1.9 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.3 -46.6 -46621 3.1 GTF3C2 SIN3A ZNF24 ZBTB40 ZBTB6 RBPJ POLR2A USF2 NR2F1 NR2F6 LINC02453 TRD-GTC1-1 TRW-CCA4-1 TMPO SLC9A7P1 SLC25A3 lnc-TMPO-1
GH12J098512 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 7.1 -59.4 -59370 7.8 GTF3C2 E2F8 ZNF785 SIN3A ZNF24 ZBTB40 SP1 CTCF SIX5 RBPJ TMPO TMPO-AS1 LOC101928937 PPIAP8 RNU6-36P RNU4-41P SLC9A7P1 LINC02453 lnc-IKBIP-7
GH12J098490 Promoter/Enhancer 1.8 VISTA Ensembl ENCODE CraniofacialAtlas dbSUPER 8.1 -34.4 -34424 4.2 ZNF24 CTCF FOXA1 MLX RBPJ POLR2A NR2F6 CREB1 MIXL1 CC2D1A TMPO RNU4-41P SLC9A7P1 lnc-TMPO-1 TRD-GTC1-1 LINC02453
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SLC9A7P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SLC9A7P1 Gene

Genomic Locations for SLC9A7P1 Gene
chr12:98,453,835-98,457,145
(GRCh38/hg38)
Size:
3,311 bases
Orientation:
Minus strand
chr12:98,847,613-98,850,923
(GRCh37/hg19)
Size:
3,311 bases
Orientation:
Minus strand

Genomic View for SLC9A7P1 Gene

Genes around SLC9A7P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC9A7P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC9A7P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC9A7P1 Gene

Proteins for SLC9A7P1 Gene

Post-translational modifications for SLC9A7P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC9A7P1 Gene

Domains & Families for SLC9A7P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SLC9A7P1 Gene

Function for SLC9A7P1 Gene

Phenotypes From GWAS Catalog for SLC9A7P1 Gene

Phenotypes for SLC9A7P1 Gene

genes like me logo Genes that share phenotypes with SLC9A7P1: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC9A7P1 Gene

Localization for SLC9A7P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLC9A7P1 Gene

Pathways & Interactions for SLC9A7P1 Gene

PathCards logo

SuperPathways for SLC9A7P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SLC9A7P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC9A7P1 Gene

Drugs & Compounds for SLC9A7P1 Gene

No Compound Related Data Available

Transcripts for SLC9A7P1 Gene

mRNA/cDNA for SLC9A7P1 Gene

(2) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SLC9A7P1 Gene

No ASD Table

Relevant External Links for SLC9A7P1 Gene

GeneLoc Exon Structure for
SLC9A7P1
ECgene alternative splicing isoforms for
SLC9A7P1

Expression for SLC9A7P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SLC9A7P1 Gene

mRNA differential expression in normal tissues according to GTEx for SLC9A7P1 Gene

This gene is overexpressed in Pancreas (x6.2) and Whole Blood (x4.6).

NURSA nuclear receptor signaling pathways regulating expression of SLC9A7P1 Gene:

SLC9A7P1

SOURCE GeneReport for Unigene cluster for SLC9A7P1 Gene:

Hs.620643
genes like me logo Genes that share expression patterns with SLC9A7P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC9A7P1 Gene

Orthologs for SLC9A7P1 Gene

Evolution for SLC9A7P1 Gene

ENSEMBL:
Gene Tree for SLC9A7P1 (if available)
TreeFam:
Gene Tree for SLC9A7P1 (if available)

No data available for Orthologs for SLC9A7P1 Gene

Paralogs for SLC9A7P1 Gene

No data available for Paralogs for SLC9A7P1 Gene

Variants for SLC9A7P1 Gene

Sequence variations from dbSNP and Humsavar for SLC9A7P1 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000553378 -- 98,457,228(-) C/A upstream_transcript_variant
rs1000895863 -- 98,458,034(-) A/G upstream_transcript_variant
rs1000907202 -- 98,457,597(-) C/A upstream_transcript_variant
rs1002134387 -- 98,454,453(-) G/A/C non_coding_transcript_variant
rs1002425496 -- 98,456,070(-) T/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SLC9A7P1 Gene

Variant ID Type Subtype PubMed ID
nsv7234 OTHER inversion 18451855

Additional Variant Information for SLC9A7P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC9A7P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SLC9A7P1 Gene

Disorders for SLC9A7P1 Gene

Additional Disease Information for SLC9A7P1

No disorders were found for SLC9A7P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC9A7P1 Gene

Publications for SLC9A7P1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

Products for SLC9A7P1 Gene

Sources for SLC9A7P1 Gene