Aliases for SLC9A3R1-AS1 Gene

Data sources for SLC9A3R1-AS1 Gene:

Subcategory (RNA class) for SLC9A3R1-AS1 Gene

lncRNA

Aliases for SLC9A3R1-AS1 Gene

External Ids for SLC9A3R1-AS1 Gene

Summaries for SLC9A3R1-AS1 Gene

GeneCards Summary for SLC9A3R1-AS1 Gene

SLC9A3R1-AS1 (SLC9A3R1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SLC9A3R1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SLC9A3R1-AS1 Gene

Genomics for SLC9A3R1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SLC9A3R1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J074746 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 -1.5 -1478 8.6 CHD2 TBP SP1 MXD4 CEBPA IKZF1 SMAD5 MBD2 POLR2A CTCF SLC9A3R1 ENSG00000266036 MIR3615 SLC9A3R1-AS1 NUP85 NT5C NAT9 GGA3 RAB37 TSEN54
GH17J074756 Promoter/Enhancer 1.9 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -15.1 -15111 15.2 CHD2 MXD4 CEBPA ZNF217 BRCA1 ZFP64 POLR2A CTCF ZBTB7B ZEB1 HSALNG0118681 NUP85 NT5C NAT9 GGA3 TSEN54 SAP30BP RAB37 RECQL5 SLC9A3R1
GH17J074754 Enhancer 0.7 ENCODE dbSUPER 0.4 -6.1 -6105 0.2 PTBP1 NRF1 ZNF143 ESRRA L3MBTL2 ZMYM3 DPF2 KDM1A BCOR HDAC2 ENSG00000266036 SLC9A3R1 SLC9A3R1-AS1 HSALNG0118681 NAT9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SLC9A3R1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SLC9A3R1-AS1 Gene

Latest Assembly
chr17:74,747,017-74,748,912
(GRCh38/hg38)
Size:
1,896 bases
Orientation:
Minus strand

Genomic View for SLC9A3R1-AS1 Gene

Genes around SLC9A3R1-AS1 on UCSC Golden Path with GeneCards custom track
SLC9A3R1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SLC9A3R1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC9A3R1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC9A3R1-AS1 Gene

Proteins for SLC9A3R1-AS1 Gene

Post-translational modifications for SLC9A3R1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC9A3R1-AS1 Gene

Domains & Families for SLC9A3R1-AS1 Gene

Gene Families for SLC9A3R1-AS1 Gene

genes like me logo Genes that share domains with SLC9A3R1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SLC9A3R1-AS1 Gene

Function for SLC9A3R1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC9A3R1-AS1 Gene

Localization for SLC9A3R1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLC9A3R1-AS1 Gene

Pathways & Interactions for SLC9A3R1-AS1 Gene

PathCards logo

SuperPathways for SLC9A3R1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SLC9A3R1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SLC9A3R1-AS1 Gene

Drugs & Compounds for SLC9A3R1-AS1 Gene

No Compound Related Data Available

Transcripts for SLC9A3R1-AS1 Gene

SLC9A3R1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SLC9A3R1-AS1 Gene

No ASD Table

Relevant External Links for SLC9A3R1-AS1 Gene

GeneLoc Exon Structure for
SLC9A3R1-AS1

No data available for mRNA/cDNA for SLC9A3R1-AS1 Gene

Expression for SLC9A3R1-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC9A3R1-AS1 Gene

Orthologs for SLC9A3R1-AS1 Gene

No data available for Orthologs and Evolution for SLC9A3R1-AS1 Gene

Paralogs for SLC9A3R1-AS1 Gene

No data available for Paralogs for SLC9A3R1-AS1 Gene

Variants for SLC9A3R1-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for SLC9A3R1-AS1 Gene

SNP ID Clinical significance and condition Chr 17 pos Variation AA Info Type
rs387907538 Uncertain Significance: not provided 74,748,879(-) G/T
NM_004252.5(SLC9A3R1):c.33G>T (p.Leu11=)
SYNONYMOUS

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SLC9A3R1-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for SLC9A3R1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC9A3R1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SLC9A3R1-AS1 Gene

Disorders for SLC9A3R1-AS1 Gene

No disorders were found for SLC9A3R1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SLC9A3R1-AS1 Gene

Publications for SLC9A3R1-AS1 Gene

No publications were found for SLC9A3R1-AS1 Gene.

No data available for Mastermind for SLC9A3R1-AS1 Gene

Products for SLC9A3R1-AS1 Gene

Sources for SLC9A3R1-AS1 Gene