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SLC6A21P Gene(Pseudogene)

Solute Carrier Family 6 Member 21, Pseudogene

GCID:
GC19M049252
GIFtS:
10
Genes Participants
UDN Logo

Aliases for SLC6A21P Gene

Aliases for SLC6A21P Gene

  • Solute Carrier Family 6 Member 21, Pseudogene 2 3 5
  • Solute Carrier Family 6 (Neurotransmitter Transporter), Member 21 (Pseudogene) 3
  • Solute Carrier Family 6 (Neutral Amino Acid Transporter), Member 15 Pseudogene 3
  • Solute Carrier Family 6 (Neurotransmitter Transporter), Member 21, Pseudogene 2
  • Solute Carrier Family 6 (Neurotransmitter Transporter), Member 21 2
  • Solute Carrier Family 6, Member 21, Pseudogene 2
  • SLC6A21 3

External Ids for SLC6A21P Gene

Previous HGNC Symbols for SLC6A21P Gene

  • SLC6A21

Previous GeneCards Identifiers for SLC6A21P Gene

  • GC19U900662
  • GC19M049755

Summaries for SLC6A21P Gene

GeneCards Summary for SLC6A21P Gene

SLC6A21P (Solute Carrier Family 6 Member 21, Pseudogene) is a Pseudogene.

Additional gene information for SLC6A21P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC6A21P Gene

Genomics for SLC6A21P Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for SLC6A21P Gene

Promoters and enhancers for SLC6A21P Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH19I049271 Enhancer 0.7 ENCODE 0.4 -15.7 -15727 2 PKNOX1 ARNT ZIC2 ZEB1 ZNF121 CTBP1 GATA3 FOS SMARCE1 ZNF362 DKKL1 LOC101928295 CCDC155 TRPM4 SUMO1P4 SLC6A21P
GH19I049224 Enhancer 0.9 Ensembl ENCODE 0.3 +31.3 31339 0.4 CTCF MAX ZNF2 RAD21 GTF3C2 CC2D1A EGR1 ADNP ZNF143 SMC3 SLC6A21P TRPM4
GH19I049207 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.2 +48.0 48008 1.4 PKNOX1 ATF1 ARNT ARID4B SIN3A ZNF2 ZNF48 ARID2 FOS ATF7 SNRNP70 PPP1R15A PRR12 CD37 C19orf73 PPFIA3 LIN7B CGB7 NTF4 SLC6A16
GH19I049226 Enhancer 0.8 ENCODE 0.3 +30.1 30131 0.2 BCOR CTCF KLF1 RB1 ZNF449 ETV1 TEAD4 ZNF2 KLF5 E4F1 SLC6A21P TRPM4
GH19I049210 Enhancer 1.1 Ensembl ENCODE 0.2 +45.5 45477 1.7 HDAC1 HDGF PKNOX1 ATF1 SIN3A THRB RAD21 EGR1 ZNF143 ATF7 SNRNP70 PPFIA3 C19orf73 LIN7B NTF4 CGB7 CD37 SLC6A16 KCNA7 CCDC155
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SLC6A21P on UCSC Golden Path with GeneCards custom track

Genomic Locations for SLC6A21P Gene

Genomic Locations for SLC6A21P Gene
chr19:49,252,333-49,256,340
(GRCh38/hg38)
Size:
4,008 bases
Orientation:
Minus strand
chr19:49,755,590-49,759,597
(GRCh37/hg19)

Genomic View for SLC6A21P Gene

Genes around SLC6A21P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC6A21P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC6A21P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SLC6A21P Gene

Proteins for SLC6A21P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SLC6A21P Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC6A21P Gene

Domains & Families for SLC6A21P Gene

Gene Families for SLC6A21P Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SLC6A21P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SLC6A21P Gene

Function for SLC6A21P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC6A21P Gene

Localization for SLC6A21P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLC6A21P Gene

Pathways & Interactions for SLC6A21P Gene

SuperPathways for SLC6A21P Gene

PathCards logo More details on SuperPathways for SLC6A21P
No Data Available

Interacting Proteins for SLC6A21P Gene

Gene Ontology (GO) - Biological Process for SLC6A21P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC6A21P Gene

Drugs & Compounds for SLC6A21P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SLC6A21P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SLC6A21P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SLC6A21P Gene

No ASD Table

Relevant External Links for SLC6A21P Gene

GeneLoc Exon Structure for
SLC6A21P
ECgene alternative splicing isoforms for
SLC6A21P

Expression for SLC6A21P Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SLC6A21P Gene

mRNA expression in normal human tissues for SLC6A21P Gene
mRNA expression by GTEx for SLC6A21P Gene

NURSA nuclear receptor signaling pathways regulating expression of SLC6A21P Gene:

SLC6A21P
genes like me logo Genes that share expression patterns with SLC6A21P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC6A21P Gene

Orthologs for SLC6A21P Gene

Evolution for SLC6A21P Gene

ENSEMBL:
Gene Tree for SLC6A21P (if available)
TreeFam:
Gene Tree for SLC6A21P (if available)

No data available for Orthologs for SLC6A21P Gene

Paralogs for SLC6A21P Gene

No data available for Paralogs for SLC6A21P Gene

Variants for SLC6A21P Gene

Additional Variant Information for SLC6A21P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC6A21P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SLC6A21P Gene

Disorders for SLC6A21P Gene

No disorders were found for SLC6A21P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SLC6A21P Gene

Publications for SLC6A21P Gene

  1. The repertoire of solute carriers of family 6: identification of new human and rodent genes. (PMID: 16125675) Höglund PJ … Fredriksson R (Biochemical and biophysical research communications 2005) 2 3 58

Products for SLC6A21P Gene

Sources for SLC6A21P Gene

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