Aliases for SLC6A21P Gene

Aliases for SLC6A21P Gene

  • Solute Carrier Family 6 Member 21, Pseudogene 2 3 5
  • Solute Carrier Family 6 (Neurotransmitter Transporter), Member 21 (Pseudogene) 3
  • Solute Carrier Family 6 (Neutral Amino Acid Transporter), Member 15 Pseudogene 3
  • Solute Carrier Family 6 (Neurotransmitter Transporter), Member 21, Pseudogene 2
  • Solute Carrier Family 6 (Neurotransmitter Transporter), Member 21 2
  • Solute Carrier Family 6, Member 21, Pseudogene 2
  • SLC6A21P 5
  • SLC6A21 3

External Ids for SLC6A21P Gene

Previous HGNC Symbols for SLC6A21P Gene

  • SLC6A21

Previous GeneCards Identifiers for SLC6A21P Gene

  • GC19U900662
  • GC19M049755

Summaries for SLC6A21P Gene

GeneCards Summary for SLC6A21P Gene

SLC6A21P (Solute Carrier Family 6 Member 21, Pseudogene) is a Pseudogene.

Additional gene information for SLC6A21P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SLC6A21P Gene

Genomics for SLC6A21P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SLC6A21P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J049271 Enhancer 0.8 Ensembl ENCODE 0.4 -15.7 -15727 2 ZIC2 ARNT ZBTB44 JUND CTBP1 ZEB1 OSR2 FOS PKNOX1 ZNF217 DKKL1 ENSG00000268686 KASH5 TRPM4 SUMO1P4 SLC6A21P SLC6A16
GH19J049231 Enhancer 0.9 Ensembl ENCODE 0.4 +24.6 24648 1 PRDM1 RELA ZNF24 IKZF2 EED DPF2 RUNX3 CBFB TCF12 BCL11A LOC107985340 piR-43164-034 SLC6A21P TRPM4 SLC6A16
GH19J049226 Enhancer 0.9 Ensembl ENCODE 0.3 +30.1 30112 0.7 CTCF TEAD4 ZNF143 REST RAD21 TRIM22 RUNX3 ZNF444 ZSCAN29 SMC3 LOC107985340 piR-43164-034 SLC6A21P TRPM4 SLC6A16
GH19J049224 Enhancer 0.8 Ensembl ENCODE 0.3 +31.4 31351 0.7 CTCF PRDM10 REST RAD21 ZNF561 EGR1 ZNF580 SMC3 MAX KLF8 piR-43164-034 LOC107985340 SLC6A21P TRPM4 SLC6A16
GH19J049270 Enhancer 0.3 Ensembl 0.4 -14.4 -14361 0.2 ZNF121 ENSG00000268686 SUMO1P4 SLC6A21P SLC6A16 TRPM4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SLC6A21P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SLC6A21P Gene

Genomic Locations for SLC6A21P Gene
chr19:49,252,333-49,256,340
(GRCh38/hg38)
Size:
4,008 bases
Orientation:
Minus strand
chr19:49,755,590-49,759,597
(GRCh37/hg19)
Size:
4,008 bases
Orientation:
Minus strand

Genomic View for SLC6A21P Gene

Genes around SLC6A21P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC6A21P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC6A21P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC6A21P Gene

Proteins for SLC6A21P Gene

Post-translational modifications for SLC6A21P Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC6A21P Gene

Domains & Families for SLC6A21P Gene

Gene Families for SLC6A21P Gene

genes like me logo Genes that share domains with SLC6A21P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SLC6A21P Gene

Function for SLC6A21P Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC6A21P Gene

Localization for SLC6A21P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLC6A21P Gene

Pathways & Interactions for SLC6A21P Gene

PathCards logo

SuperPathways for SLC6A21P Gene

No Data Available

Gene Ontology (GO) - Biological Process for SLC6A21P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SLC6A21P Gene

Drugs & Compounds for SLC6A21P Gene

No Compound Related Data Available

Transcripts for SLC6A21P Gene

mRNA/cDNA for SLC6A21P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SLC6A21P Gene

No ASD Table

Relevant External Links for SLC6A21P Gene

GeneLoc Exon Structure for
SLC6A21P

Expression for SLC6A21P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SLC6A21P Gene

genes like me logo Genes that share expression patterns with SLC6A21P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC6A21P Gene

Orthologs for SLC6A21P Gene

Evolution for SLC6A21P Gene

ENSEMBL:
Gene Tree for SLC6A21P (if available)
TreeFam:
Gene Tree for SLC6A21P (if available)

No data available for Orthologs for SLC6A21P Gene

Paralogs for SLC6A21P Gene

No data available for Paralogs for SLC6A21P Gene

Variants for SLC6A21P Gene

Additional Variant Information for SLC6A21P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC6A21P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SLC6A21P Gene

Disorders for SLC6A21P Gene

No disorders were found for SLC6A21P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SLC6A21P Gene

Publications for SLC6A21P Gene

  1. The repertoire of solute carriers of family 6: identification of new human and rodent genes. (PMID: 16125675) Höglund PJ … Fredriksson R (Biochemical and biophysical research communications 2005) 2 3

Products for SLC6A21P Gene

Sources for SLC6A21P Gene