Aliases for SLC6A17-AS1 Gene

Subcategory (RNA class) for SLC6A17-AS1 Gene

lncRNA

Aliases for SLC6A17-AS1 Gene

  • SLC6A17 Antisense RNA 1 2 3

External Ids for SLC6A17-AS1 Gene

Summaries for SLC6A17-AS1 Gene

GeneCards Summary for SLC6A17-AS1 Gene

SLC6A17-AS1 (SLC6A17 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SLC6A17-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SLC6A17-AS1 Gene

Genomics for SLC6A17-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SLC6A17-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J110170 Enhancer 0.6 Ensembl dbSUPER 600.7 -1.3 -1346 1.2 ZNF341 POLR2A RCOR1 SMARCA4 CHD2 GATA2 ENSG00000227091 SLC6A17-AS1 piR-30986 SLC6A17 KCNC4
GH01J110168 Enhancer 0.4 FANTOM5 dbSUPER 600.7 +1.4 1401 0.2 SLC6A17-AS1 UBL4B KCNC4 LINC02586 PROK1 ENSG00000227091 SLC6A17
GH01J110150 Promoter/Enhancer 1.1 Ensembl dbSUPER 0.4 +19.3 19340 1.4 ZNF629 ZNF692 ZIC2 POLR2A PATZ1 EZH2 ZNF600 ZFX ZNF561 KLF9 SLC6A17 lnc-SLC6A17-1 SLC6A17-AS1 KCNC4
GH01J110152 Enhancer 0.8 FANTOM5 dbSUPER 0.4 +17.8 17802 0.2 SP2 ZNF184 BHLHE40 KLF17 RFX5 FOS GLIS2 SLC6A17 KCNA2 lnc-SLC6A17-1 SLC6A17-AS1 KCNC4
GH01J110160 Enhancer 0.3 Ensembl dbSUPER 0.4 +9.6 9641 0.8 SLC6A17-AS1 SLC6A17 KCNC4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SLC6A17-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SLC6A17-AS1 Gene

Genomic Locations for SLC6A17-AS1 Gene
chr1:110,165,759-110,170,241
(GRCh38/hg38)
Size:
4,483 bases
Orientation:
Minus strand

Genomic View for SLC6A17-AS1 Gene

Genes around SLC6A17-AS1 on UCSC Golden Path with GeneCards custom track
SLC6A17-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SLC6A17-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC6A17-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC6A17-AS1 Gene

Proteins for SLC6A17-AS1 Gene

Post-translational modifications for SLC6A17-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC6A17-AS1 Gene

Domains & Families for SLC6A17-AS1 Gene

Gene Families for SLC6A17-AS1 Gene

genes like me logo Genes that share domains with SLC6A17-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SLC6A17-AS1 Gene

Function for SLC6A17-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC6A17-AS1 Gene

Localization for SLC6A17-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLC6A17-AS1 Gene

Pathways & Interactions for SLC6A17-AS1 Gene

PathCards logo

SuperPathways for SLC6A17-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SLC6A17-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SLC6A17-AS1 Gene

Drugs & Compounds for SLC6A17-AS1 Gene

No Compound Related Data Available

Transcripts for SLC6A17-AS1 Gene

SLC6A17-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SLC6A17-AS1 Gene

No ASD Table

Relevant External Links for SLC6A17-AS1 Gene

GeneLoc Exon Structure for
SLC6A17-AS1

No data available for mRNA/cDNA for SLC6A17-AS1 Gene

Expression for SLC6A17-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC6A17-AS1 Gene

Orthologs for SLC6A17-AS1 Gene

No data available for Orthologs and Evolution for SLC6A17-AS1 Gene

Paralogs for SLC6A17-AS1 Gene

No data available for Paralogs for SLC6A17-AS1 Gene

Variants for SLC6A17-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for SLC6A17-AS1 Gene

SNP ID Clinical significance and condition Chr 01 pos Variation AA Info Type
723416 Benign: not provided 110,167,225(-) A/G INTRON_VARIANT
745853 Benign: not provided 110,167,010(-) C/G SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for SLC6A17-AS1 Gene

Additional Variant Information for SLC6A17-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC6A17-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SLC6A17-AS1 Gene

Disorders for SLC6A17-AS1 Gene

No disorders were found for SLC6A17-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SLC6A17-AS1 Gene

Publications for SLC6A17-AS1 Gene

No publications were found for SLC6A17-AS1 Gene.

No data available for Mastermind for SLC6A17-AS1 Gene

Products for SLC6A17-AS1 Gene

Sources for SLC6A17-AS1 Gene