Aliases for SLC6A12-AS1 Gene

Subcategory (RNA class) for SLC6A12-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for SLC6A12-AS1 Gene

  • SLC6A12 Antisense RNA 1 2 3
  • Novel Transcript 5
  • NONHSAG010131.2 91
  • HSALNG0088454 164
  • AC007406.4 5

External Ids for SLC6A12-AS1 Gene

Summaries for SLC6A12-AS1 Gene

GeneCards Summary for SLC6A12-AS1 Gene

SLC6A12-AS1 (SLC6A12 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SLC6A12-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SLC6A12-AS1 Gene

Genomics for SLC6A12-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SLC6A12-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SLC6A12-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SLC6A12-AS1 Gene

Genomic Locations for SLC6A12-AS1 Gene
chr12:203,642-205,094
(GRCh38/hg38)
Size:
1,453 bases
Orientation:
Plus strand
chr12:312,808-314,189
(GRCh37/hg19)
Size:
1,382 bases
Orientation:
Plus strand

Genomic View for SLC6A12-AS1 Gene

Genes around SLC6A12-AS1 on UCSC Golden Path with GeneCards custom track
SLC6A12-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SLC6A12-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC6A12-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC6A12-AS1 Gene

Proteins for SLC6A12-AS1 Gene

Post-translational modifications for SLC6A12-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC6A12-AS1 Gene

Domains & Families for SLC6A12-AS1 Gene

Gene Families for SLC6A12-AS1 Gene

genes like me logo Genes that share domains with SLC6A12-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SLC6A12-AS1 Gene

Function for SLC6A12-AS1 Gene

Phenotypes From GWAS Catalog for SLC6A12-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC6A12-AS1 Gene

Localization for SLC6A12-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLC6A12-AS1 Gene

Pathways & Interactions for SLC6A12-AS1 Gene

PathCards logo

SuperPathways for SLC6A12-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SLC6A12-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SLC6A12-AS1 Gene

Drugs & Compounds for SLC6A12-AS1 Gene

No Compound Related Data Available

Transcripts for SLC6A12-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SLC6A12-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000777C2E_9606 lncRNA 765 1

Ensembl: ENST00000539568 (view in UCSC) ,

URS000075E0DA_9606 lncRNA 761 1

RefSeq: NR_120475,

URS00009C00FB_9606 lncRNA 694 2

LncBook: HSALNT0183987,

NONCODE: NONHSAT161708.1,

URS00008B500F_9606 lncRNA 802 1

NONCODE: NONHSAT025315.2,

URS000049CC00_9606 lncRNA 694 1

NONCODE: NONHSAT025314.2,

SLC6A12-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SLC6A12-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SLC6A12-AS1 Gene

No ASD Table

Relevant External Links for SLC6A12-AS1 Gene

GeneLoc Exon Structure for
SLC6A12-AS1

Expression for SLC6A12-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SLC6A12-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC6A12-AS1 Gene

Orthologs for SLC6A12-AS1 Gene

Evolution for SLC6A12-AS1 Gene

ENSEMBL:
Gene Tree for SLC6A12-AS1 (if available)
TreeFam:
Gene Tree for SLC6A12-AS1 (if available)

No data available for Orthologs for SLC6A12-AS1 Gene

Paralogs for SLC6A12-AS1 Gene

No data available for Paralogs for SLC6A12-AS1 Gene

Variants for SLC6A12-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for SLC6A12-AS1 Gene

SNP ID Clinical significance and condition Chr 12 pos Variation AA Info Type
781056 Benign: not provided 204,619(+) T/C SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for SLC6A12-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for SLC6A12-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1330n100 CNV gain 25217958
dgv1331n100 CNV gain 25217958
esv3628221 CNV gain 21293372
esv3628226 CNV gain 21293372
nsv1035539 CNV gain 25217958
nsv428269 CNV gain+loss 18775914
nsv468947 CNV gain 19166990
nsv523142 CNV gain 19592680
nsv556855 CNV loss 21841781
nsv556856 CNV loss 21841781
nsv556857 CNV gain 21841781
nsv556861 CNV loss 21841781
nsv832302 CNV gain 17160897

Additional Variant Information for SLC6A12-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC6A12-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SLC6A12-AS1 Gene

Disorders for SLC6A12-AS1 Gene

No disorders were found for SLC6A12-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SLC6A12-AS1 Gene

Publications for SLC6A12-AS1 Gene

No publications were found for SLC6A12-AS1 Gene.

No data available for Mastermind for SLC6A12-AS1 Gene

Products for SLC6A12-AS1 Gene

Sources for SLC6A12-AS1 Gene