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Aliases for SLC6A1-AS1 Gene

Subcategory (RNA class) for SLC6A1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SLC6A1-AS1 Gene

  • SLC6A1 Antisense RNA 1 2 3 5
  • SLC6A1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SLC6A1-AS1 Gene

Previous GeneCards Identifiers for SLC6A1-AS1 Gene

  • GC00U933233

Summaries for SLC6A1-AS1 Gene

GeneCards Summary for SLC6A1-AS1 Gene

SLC6A1-AS1 (SLC6A1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SLC6A1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC6A1-AS1 Gene

Genomics for SLC6A1-AS1 Gene

GeneHancer (GH) Regulatory Elements for SLC6A1-AS1 Gene

Promoters and enhancers for SLC6A1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I011016 Enhancer 0.6 dbSUPER 550.8 -1.3 -1297 7.7 CTCF BCOR FOXA2 RXRA ZMYM3 REST YY1 ZKSCAN1 JUND ATF3 SLC6A1-AS1 SLC6A1 LOC101927467
GH03I011182 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.4 -165.7 -165710 5.2 PKNOX1 CLOCK SIN3A BRCA1 TCF12 ELK1 ZNF143 SMARCB1 SMARCA4 GLIS1 SLC6A1-AS1 SLC6A1 LOC102723663 LOC105376951 HRH1
GH03I011198 Enhancer 1.2 Ensembl ENCODE dbSUPER 10.3 -181.8 -181750 4 ZSCAN4 ZFP64 SMARCC2 ZNF280D SMARCC1 ZBTB11 ZC3H11A CEBPB ZNF623 ZNF518A ENSG00000271716 TAMM41 SEC13 SLC6A1-AS1 SLC6A1 GHRLOS ATG7 LOC102723663 LOC105376951 HRH1
GH03I011194 Enhancer 1.2 Ensembl ENCODE dbSUPER 10.3 -177.5 -177501 3.6 PKNOX1 FEZF1 ZNF366 ZSCAN5C FOS CEBPB ZEB2 ZNF843 ATF4 PRDM6 SLC6A1-AS1 SLC6A1 ATG7 LOC102723663 LOC105376951 HRH1
GH03I011139 Enhancer 1.1 Ensembl ENCODE dbSUPER 10.8 -121.2 -121223 1.7 KLF1 KLF17 MAX ZMYM3 EBF1 E2F1 ZBTB48 POLR2A IKZF2 CHD2 SLC6A1-AS1 SLC6A1 HRH1 LOC105376951
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SLC6A1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SLC6A1-AS1 Gene

Genomic Locations for SLC6A1-AS1 Gene
chr3:11,006,098-11,019,224
(GRCh38/hg38)
Size:
13,127 bases
Orientation:
Minus strand
chr3:11,047,784-11,060,910
(GRCh37/hg19)

Genomic View for SLC6A1-AS1 Gene

Genes around SLC6A1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC6A1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC6A1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC6A1-AS1 Gene

Proteins for SLC6A1-AS1 Gene

Post-translational modifications for SLC6A1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC6A1-AS1 Gene

Domains & Families for SLC6A1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SLC6A1-AS1 Gene

Function for SLC6A1-AS1 Gene

Phenotypes From GWAS Catalog for SLC6A1-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC6A1-AS1 Gene

Localization for SLC6A1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLC6A1-AS1 Gene

Pathways & Interactions for SLC6A1-AS1 Gene

SuperPathways for SLC6A1-AS1 Gene

No Data Available

Interacting Proteins for SLC6A1-AS1 Gene

Gene Ontology (GO) - Biological Process for SLC6A1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC6A1-AS1 Gene

Drugs & Compounds for SLC6A1-AS1 Gene

No Compound Related Data Available

Transcripts for SLC6A1-AS1 Gene

mRNA/cDNA for SLC6A1-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SLC6A1-AS1 Gene

SLC6A1 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SLC6A1-AS1 Gene

No ASD Table

Relevant External Links for SLC6A1-AS1 Gene

GeneLoc Exon Structure for
SLC6A1-AS1
ECgene alternative splicing isoforms for
SLC6A1-AS1

Expression for SLC6A1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SLC6A1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SLC6A1-AS1 Gene

This gene is overexpressed in Brain - Caudate (basal ganglia) (x4.1).

SOURCE GeneReport for Unigene cluster for SLC6A1-AS1 Gene:

Hs.628542
genes like me logo Genes that share expression patterns with SLC6A1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC6A1-AS1 Gene

Orthologs for SLC6A1-AS1 Gene

Evolution for SLC6A1-AS1 Gene

ENSEMBL:
Gene Tree for SLC6A1-AS1 (if available)
TreeFam:
Gene Tree for SLC6A1-AS1 (if available)

No data available for Orthologs for SLC6A1-AS1 Gene

Paralogs for SLC6A1-AS1 Gene

No data available for Paralogs for SLC6A1-AS1 Gene

Variants for SLC6A1-AS1 Gene

Sequence variations from dbSNP and Humsavar for SLC6A1-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1064795852 likely-pathogenic, not provided, Myoclonic-atonic epilepsy 11,017,434(-) G/A intron_variant
rs116620331 likely-benign, Myoclonic-atonic epilepsy 11,020,221(-) G/A/T upstream_transcript_variant
rs142579600 benign, Myoclonic-atonic epilepsy 11,018,704(-) T/C intron_variant
rs148429200 benign, Myoclonic-atonic epilepsy 11,018,638(-) C/T intron_variant
rs183069336 benign, Myoclonic-atonic epilepsy 11,017,349(-) G/A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SLC6A1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv762e201 CNV deletion 23290073
esv4117 OTHER complex 18987735
nsv1073204 CNV deletion 25765185
nsv1121603 CNV deletion 24896259
nsv436362 CNV deletion 17901297
nsv436869 CNV insertion 17901297
nsv508209 CNV deletion 20534489
nsv518622 CNV loss 19592680

Additional Variant Information for SLC6A1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC6A1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SLC6A1-AS1 Gene

Disorders for SLC6A1-AS1 Gene

Additional Disease Information for SLC6A1-AS1

No disorders were found for SLC6A1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC6A1-AS1 Gene

Publications for SLC6A1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for SLC6A1-AS1 Gene

Sources for SLC6A1-AS1 Gene

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