Aliases for SLC44A3-AS1 Gene

Subcategory (RNA class) for SLC44A3-AS1 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for SLC44A3-AS1 Gene

  • SLC44A3 Antisense RNA 1 2 3 5
  • Long Intergenic Non-Protein Coding RNA 1057 2 3
  • HSALNG0005335 169
  • NONHSAG002128 94
  • XLOC_000303 3
  • SLC44A3-AS1 2
  • LINC01057 3
  • Lnc-F3-7 170

External Ids for SLC44A3-AS1 Gene

Previous HGNC Symbols for SLC44A3-AS1 Gene

  • LINC01057

Summaries for SLC44A3-AS1 Gene

GeneCards Summary for SLC44A3-AS1 Gene

SLC44A3-AS1 (SLC44A3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SLC44A3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SLC44A3-AS1 Gene

Genomics for SLC44A3-AS1 Gene

GeneHancer (GH) Regulatory Elements for SLC44A3-AS1 Gene

Promoters and enhancers for SLC44A3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J094854 Promoter/Enhancer 1.9 Ensembl ENCODE CraniofacialAtlas dbSUPER 768.7 +0.2 221 2.4 CTCF USF2 MIXL1 CC2D1A MAX RAD21 MLLT1 TFE3 RELA SP5 SLC44A3-AS1 RF00017-278 lnc-CNN3-1 RF00017-277 SLC44A3
GH01J094819 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 12 +34.2 34174 4.5 CTCF RBPJ HLF HNF1A KAT8 GLIS2 ZBTB8A PRDM10 ZEB2 SP1 SLC44A3 SLC44A3-AS1 RF00017-277
GH01J094539 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10 +314.2 314179 9.3 SMARCE1 POLR2A MYC HLF TEAD4 SP1 MAFK CBFA2T2 BACH1 SP7 F3 lnc-ABCD3-1 lnc-ARHGAP29-7 SLC44A3 SLC44A3-AS1 ABCD3 MIR12133-001 piR-33614-012 lnc-F3-3
GH01J094782 Enhancer 0.9 Ensembl ENCODE 19.4 +71.7 71662 2.5 POLR2A SP7 PKNOX1 PRDM10 ZEB2 PATZ1 ZNF629 CHD2 ZNF692 ZNF561 SLC44A3 SLC44A3-AS1 F3 MIR378G
GH01J094753 Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.9 +99.5 99534 5.8 RBPJ NR2F6 MYC HLF L3MBTL2 MAX ZNF652 ELF3 SP1 MAFK SLC44A3 F3 SLC44A3-AS1 ARHGAP29 RWDD3 MIR378G
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SLC44A3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SLC44A3-AS1 Gene

Genomic Locations for SLC44A3-AS1 Gene
chr1:94,613,814-94,855,426
(GRCh38/hg38)
Size:
241,613 bases
Orientation:
Minus strand
chr1:95,104,017-95,285,837
(GRCh37/hg19)
Size:
181,821 bases
Orientation:
Minus strand

Genomic View for SLC44A3-AS1 Gene

Genes around SLC44A3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC44A3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC44A3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC44A3-AS1 Gene

Proteins for SLC44A3-AS1 Gene

Post-translational modifications for SLC44A3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC44A3-AS1 Gene

Domains & Families for SLC44A3-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SLC44A3-AS1 Gene

Function for SLC44A3-AS1 Gene

Phenotypes From GWAS Catalog for SLC44A3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC44A3-AS1 Gene

Localization for SLC44A3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLC44A3-AS1 Gene

Pathways & Interactions for SLC44A3-AS1 Gene

PathCards logo

SuperPathways for SLC44A3-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SLC44A3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC44A3-AS1 Gene

Drugs & Compounds for SLC44A3-AS1 Gene

No Compound Related Data Available

Transcripts for SLC44A3-AS1 Gene

mRNA/cDNA for SLC44A3-AS1 Gene

(7) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(19) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(18) NONCODE transcripts :
(35) RNACentral transcripts :
(23) LncBook transcripts :
(27) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SLC44A3-AS1 Gene

No ASD Table

Relevant External Links for SLC44A3-AS1 Gene

GeneLoc Exon Structure for
SLC44A3-AS1
ECgene alternative splicing isoforms for
SLC44A3-AS1

Expression for SLC44A3-AS1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SLC44A3-AS1 Gene:

SLC44A3-AS1
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC44A3-AS1 Gene

Orthologs for SLC44A3-AS1 Gene

Evolution for SLC44A3-AS1 Gene

ENSEMBL:
Gene Tree for SLC44A3-AS1 (if available)
TreeFam:
Gene Tree for SLC44A3-AS1 (if available)

No data available for Orthologs for SLC44A3-AS1 Gene

Paralogs for SLC44A3-AS1 Gene

No data available for Paralogs for SLC44A3-AS1 Gene

Variants for SLC44A3-AS1 Gene

Sequence variations from dbSNP and Humsavar for SLC44A3-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000015974 -- 94,803,861(-) T/C intron_variant
rs1000017463 -- 94,716,663(-) G/A intron_variant
rs1000035843 -- 94,675,527(-) G/A intron_variant
rs1000048510 -- 94,749,049(-) A/C intron_variant
rs1000053772 -- 94,720,680(-) C/G/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SLC44A3-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv208n100 CNV loss 25217958
dgv23n27 CNV loss 19166990
dgv375n54 CNV loss 21841781
esv2421913 CNV deletion 20811451
esv2677135 CNV deletion 23128226
esv2758950 CNV loss 17122850
esv2764194 CNV loss 21179565
esv28208 CNV loss 19812545
esv34973 CNV loss 17911159
esv3565993 CNV deletion 23714750
esv3586840 CNV loss 21293372
nsv1001043 CNV gain 25217958
nsv10372 CNV gain 18304495
nsv436535 CNV deletion 17901297
nsv437227 CNV loss 16327808
nsv437228 CNV loss 16327808
nsv437229 CNV loss 16327808
nsv437915 CNV loss 16468122
nsv442927 CNV loss 18776908
nsv462528 CNV loss 19166990
nsv470726 CNV loss 18288195
nsv513993 CNV loss 21397061
nsv517330 CNV loss 19592680
nsv546852 CNV loss 21841781
nsv546853 CNV loss 21841781
nsv818267 CNV loss 17921354

Additional Variant Information for SLC44A3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC44A3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SLC44A3-AS1 Gene

Disorders for SLC44A3-AS1 Gene

Additional Disease Information for SLC44A3-AS1

No disorders were found for SLC44A3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC44A3-AS1 Gene

Publications for SLC44A3-AS1 Gene

  1. Circulating lncRNAs associated with occurrence of colorectal cancer progression. (PMID: 26328256) Shi J … Hu S (American journal of cancer research 2015) 3 56
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 56

Products for SLC44A3-AS1 Gene

Sources for SLC44A3-AS1 Gene