Aliases for SLC39A12-AS1 Gene

Subcategory (RNA class) for SLC39A12-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for SLC39A12-AS1 Gene

  • SLC39A12 Antisense RNA 1 2 3 5
  • SLC39A12-AS1 2 168
  • NONHSAG005336 92
  • HSALNG0076480 167

External Ids for SLC39A12-AS1 Gene

Previous GeneCards Identifiers for SLC39A12-AS1 Gene

  • GC10M018291

Summaries for SLC39A12-AS1 Gene

GeneCards Summary for SLC39A12-AS1 Gene

SLC39A12-AS1 (SLC39A12 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SLC39A12-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SLC39A12-AS1 Gene

Genomics for SLC39A12-AS1 Gene

GeneHancer (GH) Regulatory Elements for SLC39A12-AS1 Gene

Promoters and enhancers for SLC39A12-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J018009 Enhancer 0.4 Ensembl 500.7 +0.4 363 1.2 POLR2A ZBTB17 FOS CEBPB STAT3 SLC39A12-AS1 SLC39A12
GH10J018139 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 7.4 -130.3 -130338 3.4 CTCF ZIC2 POLR2A ZBTB26 SAP30 ZEB1 ZNF341 EZH2 OSR2 KLF9 CACNB2 SLC39A12-AS1 piR-41306-026
GH10J018157 Enhancer 1 Ensembl ENCODE dbSUPER 9.2 -148.1 -148091 2.9 JUND FOS EP300 ZNF341 BRCA1 CEBPB JUN RCOR1 EZH2 STAT3 SLC39A12-AS1 piR-41306-026 CACNB2 piR-61945-038
GH10J018144 Enhancer 0.9 Ensembl ENCODE dbSUPER 8.8 -134.9 -134937 2.6 ATF2 ZBTB17 ZNF263 FOS POLR2A STAT3 SCRT1 ZBTB21 ZNF362 ZNF629 SLC39A12-AS1 CACNB2 piR-41306-026
GH10J018163 Enhancer 1 FANTOM5 Ensembl ENCODE dbSUPER 7.8 -154.0 -153998 2.2 FOS EZH2 MAFK SP7 CEBPB STAT3 CACNB2 SLC39A12-AS1 piR-61945-038 piR-41306-026
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SLC39A12-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SLC39A12-AS1 Gene

Genomic Locations for SLC39A12-AS1 Gene
chr10:18,001,786-18,010,563
(GRCh38/hg38)
Size:
8,778 bases
Orientation:
Minus strand
chr10:18,290,715-18,299,491
(GRCh37/hg19)
Size:
8,777 bases
Orientation:
Minus strand

Genomic View for SLC39A12-AS1 Gene

Genes around SLC39A12-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC39A12-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC39A12-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC39A12-AS1 Gene

Proteins for SLC39A12-AS1 Gene

Post-translational modifications for SLC39A12-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC39A12-AS1 Gene

Domains & Families for SLC39A12-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SLC39A12-AS1 Gene

Function for SLC39A12-AS1 Gene

Phenotypes From GWAS Catalog for SLC39A12-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC39A12-AS1 Gene

Localization for SLC39A12-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLC39A12-AS1 Gene

Pathways & Interactions for SLC39A12-AS1 Gene

PathCards logo

SuperPathways for SLC39A12-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SLC39A12-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SLC39A12-AS1 Gene

Drugs & Compounds for SLC39A12-AS1 Gene

No Compound Related Data Available

Transcripts for SLC39A12-AS1 Gene

mRNA/cDNA for SLC39A12-AS1 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
2 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SLC39A12-AS1 Gene

No ASD Table

Relevant External Links for SLC39A12-AS1 Gene

GeneLoc Exon Structure for
SLC39A12-AS1

Expression for SLC39A12-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SLC39A12-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SLC39A12-AS1 Gene

This gene is overexpressed in Brain - Anterior cingulate cortex (BA24) (x6.7), Brain - Amygdala (x6.3), Brain - Putamen (basal ganglia) (x6.2), Brain - Frontal Cortex (BA9) (x6.1), Brain - Hippocampus (x6.0), Brain - Cortex (x5.6), and Brain - Nucleus accumbens (basal ganglia) (x4.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SLC39A12-AS1

genes like me logo Genes that share expression patterns with SLC39A12-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC39A12-AS1 Gene

Orthologs for SLC39A12-AS1 Gene

Evolution for SLC39A12-AS1 Gene

ENSEMBL:
Gene Tree for SLC39A12-AS1 (if available)
TreeFam:
Gene Tree for SLC39A12-AS1 (if available)

No data available for Orthologs for SLC39A12-AS1 Gene

Paralogs for SLC39A12-AS1 Gene

No data available for Paralogs for SLC39A12-AS1 Gene

Variants for SLC39A12-AS1 Gene

Additional dbSNP identifiers (rs#s) for SLC39A12-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for SLC39A12-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1039655 CNV loss 25217958

Additional Variant Information for SLC39A12-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC39A12-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SLC39A12-AS1 Gene

Disorders for SLC39A12-AS1 Gene

Additional Disease Information for SLC39A12-AS1

No disorders were found for SLC39A12-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC39A12-AS1 Gene

Publications for SLC39A12-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

No data available for Mastermind for SLC39A12-AS1 Gene

Products for SLC39A12-AS1 Gene

Sources for SLC39A12-AS1 Gene