Aliases for SLC35F6 Gene

Aliases for SLC35F6 Gene

  • Solute Carrier Family 35 Member F6 2 3 4 5
  • ANT2-Binding Protein 2 3 4
  • ANT2BP 2 3 4
  • Transport And Golgi Organization 9 Homolog 3 4
  • C2orf18 3 4
  • TANGO9 2 3
  • Transport And Golgi Organization 9 Homolog (Drosophila) 2
  • Solute Carrier Family 35, Member F6 2
  • Chromosome 2 Open Reading Frame 18 2
  • Transmembrane Protein C2orf18 3
  • FLJ20555 2
  • SLC35F6 5

External Ids for SLC35F6 Gene

Previous HGNC Symbols for SLC35F6 Gene

  • C2orf18

Previous GeneCards Identifiers for SLC35F6 Gene

  • GC02P026989

Summaries for SLC35F6 Gene

GeneCards Summary for SLC35F6 Gene

SLC35F6 (Solute Carrier Family 35 Member F6) is a Protein Coding gene. Diseases associated with SLC35F6 include Pancreatic Ductal Adenocarcinoma. Gene Ontology (GO) annotations related to this gene include carbohydrate:proton symporter activity.

UniProtKB/Swiss-Prot Summary for SLC35F6 Gene

  • Involved in the maintenance of mitochondrial membrane potential in pancreatic ductal adenocarcinoma (PDAC) cells. Promotes pancreatic ductal adenocarcinoma (PDAC) cell growth. May play a role as a nucleotide-sugar transporter.

Gene Wiki entry for SLC35F6 Gene

Additional gene information for SLC35F6 Gene

No data available for Entrez Gene Summary , CIViC Summary , Tocris Summary , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SLC35F6 Gene

Genomics for SLC35F6 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SLC35F6 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J026763 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +0.5 535 2.9 CREB1 GATAD2A PRDM10 TFE3 SOX13 ZNF692 POLR2A BACH1 LARP7 MTA2 CENPA SLC35F6 hsa-miR-5095-288 CAD ENSG00000234072 EIF2B4 ATRAID GTF3C2 TMEM214 KHK
GH02J026779 Promoter 0.4 EPDnew 600.4 +14.8 14764 0.1 FOS SLC35F6 NONHSAG027291.2 CENPA DPYSL5
GH02J026717 Enhancer 1.7 VISTA FANTOM5 Ensembl ENCODE dbSUPER 12 -42.0 -42029 10.1 HNRNPL CREB1 GATAD2A REST IKZF1 RCOR2 JUND FOXA1 ZIC2 RXRB CENPA EIF2B4 GPN1 GTF3C2 CAD KCNK3 SLC35F6 GTF3C2-AS1 NRBP1 FAM166C
GH02J027122 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 5.3 +359.4 359425 1.8 HNRNPL CREB1 GATAD2A PRDM10 BACH1 ZHX2 LARP7 ZIC2 ZSCAN4 RBFOX2 ABHD1 TCF23 ATRAID SLC5A6 KHK EMILIN1 CAD CENPA SLC35F6 CGREF1
GH02J026784 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 4.7 +22.1 22117 3.2 SP1 HNRNPL CREB1 GATAD2A ZBTB33 ZNF629 TFE3 RFX1 NFKBIZ KDM1A CENPA NONHSAG027291.2 ATRAID GTF3C2 EIF2B4 ASXL2 GPN1 ENSG00000234072 NRBP1 TMEM214
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SLC35F6 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for SLC35F6

Genomic Locations for SLC35F6 Gene

Genomic Locations for SLC35F6 Gene
chr2:26,764,284-26,781,231
(GRCh38/hg38)
Size:
16,948 bases
Orientation:
Plus strand
chr2:26,987,142-27,004,099
(GRCh37/hg19)
Size:
16,958 bases
Orientation:
Plus strand

Genomic View for SLC35F6 Gene

Genes around SLC35F6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC35F6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC35F6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC35F6 Gene

Proteins for SLC35F6 Gene

  • Protein details for SLC35F6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N357-S35F6_HUMAN
    Recommended name:
    Solute carrier family 35 member F6
    Protein Accession:
    Q8N357
    Secondary Accessions:
    • D6W543
    • Q53GK2
    • Q8NBX6
    • Q9NWX0

    Protein attributes for SLC35F6 Gene

    Size:
    371 amino acids
    Molecular mass:
    40214 Da
    Quaternary structure:
    • Interacts with SLC25A5.

neXtProt entry for SLC35F6 Gene

Post-translational modifications for SLC35F6 Gene

  • Glycosylation at Asn110
  • Ubiquitination at Lys203
  • Modification sites at PhosphoSitePlus

Other Protein References for SLC35F6 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SLC35F6 Gene

Domains & Families for SLC35F6 Gene

Gene Families for SLC35F6 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted membrane proteins
  • Transporters

Protein Domains for SLC35F6 Gene

InterPro:
Blocks:
  • Protein of unknown function DUF6
ProtoNet:

Suggested Antigen Peptide Sequences for SLC35F6 Gene

GenScript: Design optimal peptide antigens:
  • cDNA FLJ55094 (B4DLH2_HUMAN)
  • Transmembrane protein C2orf18 (CB018_HUMAN)

Graphical View of Domain Structure for InterPro Entry

Q8N357

UniProtKB/Swiss-Prot:

S35F6_HUMAN :
  • Belongs to the SLC35F solute transporter family.
Family:
  • Belongs to the SLC35F solute transporter family.
genes like me logo Genes that share domains with SLC35F6: view

Function for SLC35F6 Gene

Molecular function for SLC35F6 Gene

UniProtKB/Swiss-Prot Function:
Involved in the maintenance of mitochondrial membrane potential in pancreatic ductal adenocarcinoma (PDAC) cells. Promotes pancreatic ductal adenocarcinoma (PDAC) cell growth. May play a role as a nucleotide-sugar transporter.

Phenotypes From GWAS Catalog for SLC35F6 Gene

Gene Ontology (GO) - Molecular Function for SLC35F6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 19154410
GO:0022857 transmembrane transporter activity IEA --
genes like me logo Genes that share ontologies with SLC35F6: view
genes like me logo Genes that share phenotypes with SLC35F6: view

Animal Models for SLC35F6 Gene

MGI Knock Outs for SLC35F6:
  • Slc35f6 Slc35f6<tm1a(EUCOMM)Wtsi>

Animal Model Products

CRISPR Products

miRNA for SLC35F6 Gene

miRTarBase miRNAs that target SLC35F6

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for SLC35F6

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for SLC35F6 Gene

Localization for SLC35F6 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SLC35F6 Gene

Mitochondrion. Lysosome membrane. Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SLC35F6 gene
Compartment Confidence
mitochondrion 5
lysosome 5
extracellular 4
nucleus 4
cytosol 4
plasma membrane 3
endoplasmic reticulum 0

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (2)
  • Nucleoplasm (2)
  • Vesicles (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for SLC35F6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005654 nucleoplasm IDA --
GO:0005739 mitochondrion IEA,IDA 19154410
GO:0005764 lysosome IEA --
GO:0005765 lysosomal membrane IEA,IDA 20957757
GO:0005829 cytosol IDA --
genes like me logo Genes that share ontologies with SLC35F6: view

Pathways & Interactions for SLC35F6 Gene

PathCards logo

SuperPathways for SLC35F6 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SLC35F6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008284 positive regulation of cell proliferation IMP 19154410
GO:0055085 transmembrane transport IEA --
GO:1901029 negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway IMP 19154410
genes like me logo Genes that share ontologies with SLC35F6: view

No data available for Pathways by source and SIGNOR curated interactions for SLC35F6 Gene

Drugs & Compounds for SLC35F6 Gene

No Compound Related Data Available

Transcripts for SLC35F6 Gene

mRNA/cDNA for SLC35F6 Gene

1 REFSEQ mRNAs :
15 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for SLC35F6

Alternative Splicing Database (ASD) splice patterns (SP) for SLC35F6 Gene

No ASD Table

Relevant External Links for SLC35F6 Gene

GeneLoc Exon Structure for
SLC35F6

Expression for SLC35F6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SLC35F6 Gene

Protein differential expression in normal tissues from HIPED for SLC35F6 Gene

This gene is overexpressed in Nasal epithelium (45.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for SLC35F6 Gene



Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SLC35F6

SOURCE GeneReport for Unigene cluster for SLC35F6 Gene:

Hs.516034

mRNA Expression by UniProt/SwissProt for SLC35F6 Gene:

Q8N357-S35F6_HUMAN
Tissue specificity: Expressed in pancreatic ductal adenocarcinoma (PDAC) (at protein level). Strongly expressed in prostate and thyroid. Weakly expressed in lung, heart, liver and kidney.

Evidence on tissue expression from TISSUES for SLC35F6 Gene

  • Kidney(4.2)
  • Blood(4.1)
genes like me logo Genes that share expression patterns with SLC35F6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC35F6 Gene

Orthologs for SLC35F6 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for SLC35F6 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SLC35F6 31
  • 100 (a)
OneToOne
C2AH2orf18 30
  • 99.37 (n)
Cow
(Bos Taurus)
Mammalia MGC139367 31
  • 94 (a)
OneToOne
C11H2orf18 30
  • 90.21 (n)
Dog
(Canis familiaris)
Mammalia SLC35F6 31
  • 94 (a)
OneToOne
C17H2orf18 30
  • 90.03 (n)
Rat
(Rattus norvegicus)
Mammalia Slc35f6 30
  • 87.15 (n)
Oppossum
(Monodelphis domestica)
Mammalia SLC35F6 31
  • 86 (a)
OneToOne
Platypus
(Ornithorhynchus anatinus)
Mammalia SLC35F6 31
  • 86 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Slc35f6 30 17 31
  • 85.8 (n)
OneToOne
Chicken
(Gallus gallus)
Aves SLC35F6 31
  • 80 (a)
OneToOne
C2ORF18 30
  • 78.86 (n)
Lizard
(Anolis carolinensis)
Reptilia SLC35F6 31
  • 76 (a)
OneToOne
Zebrafish
(Danio rerio)
Actinopterygii slc35f6 30 31
  • 68.57 (n)
OneToOne
sbcb433 30
Rainbow Trout
(Oncorhynchus mykiss)
Actinopterygii Omy.3488 30
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP003549 30
  • 58.31 (n)
Fruit Fly
(Drosophila melanogaster)
Insecta Tango9 31
  • 34 (a)
OneToOne
Worm
(Caenorhabditis elegans)
Secernentea C29H12.2 30 31
  • 56.31 (n)
OneToOne
K. Lactis Yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0C04433g 30
  • 44.27 (n)
Sea Squirt
(Ciona savignyi)
Ascidiacea CSA.11327 31
  • 57 (a)
OneToOne
Bread mold
(Neurospora crassa)
Ascomycetes NCU00025 30
  • 53.6 (n)
Fission Yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes SPAC12G12.12 30
  • 43.95 (n)
Sea Vase
(Ciona intestinalis)
Ascidiacea Cin.4383 30
Species where no ortholog for SLC35F6 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)

Evolution for SLC35F6 Gene

ENSEMBL:
Gene Tree for SLC35F6 (if available)
TreeFam:
Gene Tree for SLC35F6 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for SLC35F6: view image

Paralogs for SLC35F6 Gene

(1) SIMAP similar genes for SLC35F6 Gene using alignment to 3 proteins:

  • S35F6_HUMAN
  • F8WB19_HUMAN
  • F8WCT7_HUMAN
genes like me logo Genes that share paralogs with SLC35F6: view

No data available for Paralogs for SLC35F6 Gene

Variants for SLC35F6 Gene

Additional dbSNP identifiers (rs#s) for SLC35F6 Gene

Variation tolerance for SLC35F6 Gene

Residual Variation Intolerance Score: 19.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.89; 35.29% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for SLC35F6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC35F6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Structural Variations from Database of Genomic Variants (DGV) for SLC35F6 Gene

Disorders for SLC35F6 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SLC35F6 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
pancreatic ductal adenocarcinoma
  • ductal adenocarcinoma of the pancreas
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with SLC35F6: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SLC35F6 Gene

Publications for SLC35F6 Gene

  1. Identification of C2orf18, termed ANT2BP (ANT2-binding protein), as one of the key molecules involved in pancreatic carcinogenesis. (PMID: 19154410) Kashiwaya K … Nakagawa H (Cancer science 2009) 2 3 4
  2. The proteome of lysosomes. (PMID: 20957757) Schröder BA … Saftig P (Proteomics 2010) 3 4
  3. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier LW … Wilson RK (Nature 2005) 3 4
  4. Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries. (PMID: 16303743) Otsuki T … Isogai T (DNA research : an international journal for rapid publication of reports on genes and genomes 2005) 3 4
  5. The human solute carrier gene SLC35B4 encodes a bifunctional nucleotide sugar transporter with specificity for UDP-xylose and UDP-N-acetylglucosamine. (PMID: 15911612) Ashikov A … Bakker H (The Journal of biological chemistry 2005) 2 3

Products for SLC35F6 Gene

Sources for SLC35F6 Gene